View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7325_high_8 (Length: 539)
Name: NF7325_high_8
Description: NF7325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7325_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 35 - 487
Target Start/End: Complemental strand, 46719559 - 46719125
Alignment:
| Q |
35 |
attgtattttattagggtttgttcctctttatttcattttatgagagaaaaataaaacctggagtaaccatgcaactacttttaaaatcaataatacatt |
134 |
Q |
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| T |
46719559 |
attgtattttattagggtttgttcctctttatttcattttatgagagaaaaataaaacctggagtaaccatgcaactacttttaaaatcaataatacatt |
46719460 |
T |
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| Q |
135 |
gccatgtatcgtgtgaagacaaagataaataaattgaaatgtatgtgatgtaagggaaagagagatttaaatttcaggtaacatctctcacttgctaatc |
234 |
Q |
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| T |
46719459 |
gccatgtatcgtgtgaagacaaagataaataaattgaaatgtatgtgatgtgagggaaagagagatttaaatttcaggtaacatctctcacttgctaatc |
46719360 |
T |
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| Q |
235 |
aatttccatatgtttagagcatctttaatcgtaaaaccaatttggagctcttaaaagagtcnnnnnnngacgttttcttaataacaaaaaggaaataata |
334 |
Q |
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| T |
46719359 |
catttccatatgtttagagcatctttaatcataa------------------aaaagagtatttttttgacgttttcttaataacaaaaaggaaataaca |
46719278 |
T |
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| Q |
335 |
actaaagctaaggaataagacaatcgaggaaaagaggtccatttgaaatcatcaacaaacaacattgatctgataattaacattaacaaaggcagtatac |
434 |
Q |
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| T |
46719277 |
actaaagctaaggaataagacgatcgaggaaaagaggtccatttgaaatcatcaacaaacaacattgatctgataattaacattaacaaaggcagtatac |
46719178 |
T |
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| Q |
435 |
gccttgtcaaattaaatctaccatagaagaaagaacaaataaatattaggtga |
487 |
Q |
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| T |
46719177 |
gccttgtcaaattaaatctaccatagaagaaagaacaaataaatattaggtga |
46719125 |
T |
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