View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7325_low_13 (Length: 445)

Name: NF7325_low_13
Description: NF7325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7325_low_13
NF7325_low_13
[»] chr7 (11 HSPs)
chr7 (1-429)||(31202661-31203089)
chr7 (194-425)||(31061979-31062210)
chr7 (194-429)||(31049652-31049887)
chr7 (194-425)||(31162552-31162783)
chr7 (194-425)||(31144728-31144959)
chr7 (198-425)||(31107150-31107377)
chr7 (34-119)||(31145031-31145116)
chr7 (34-119)||(31162855-31162940)
chr7 (37-119)||(31049959-31050041)
chr7 (20-114)||(31062450-31062544)
chr7 (37-114)||(31107456-31107533)
[»] chr5 (2 HSPs)
chr5 (322-425)||(42315247-42315350)
chr5 (318-422)||(37016363-37016467)
[»] chr3 (1 HSPs)
chr3 (321-422)||(24268665-24268766)
[»] chr4 (2 HSPs)
chr4 (379-429)||(42736248-42736298)
chr4 (379-429)||(42768149-42768199)
[»] chr8 (1 HSPs)
chr8 (386-414)||(8132910-8132938)


Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 31202661 - 31203089
Alignment:
Q  1 ctacaataaagttttcaagagcaaaaacactctatggaagaaagccagctccagttatggcttcattctcatctagaggaccaaataaaattcagccatc 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31202661 ctacaataaagttttcaggagcaaaaacactctatggaagaaagccagctccagtaatggcttcattctcatctagaggaccaaataaaattcagccatc 31202760  T
Q  101 aatactcaaggtgtatatatacatggactagtaatcaactatctatagtaatggtcctccttagttgtcnnnnnnnnncaatggggtatttaatttgttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||         ||||||||||||||||||||||    
T  31202761 aatactcaaggtgtatatatacatggactagtaatcaactatctatagtaatggtcttccttagttgtctttttttttcaatggggtatttaatttgttt 31202860  T
Q  201 tttgtttcagcctgatgtaactgcaccaggtgtgaacatacttgctgcctattcgttgtacgcaagtgcatctaatttaataacagacaatcgcaacaat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31202861 tttgtttcagcctgatgtaactgcaccaggtgtgaacatacttgctgcctattcgttgtacgcaagtgcatctaatttaaaaacagacaatcgcaacaat 31202960  T
Q  301 tttccattcaatgtactacaaggaacttctatgtcttgccctcatgttgccggcattgcgggacttatcaaaacaaagcatcctaattggagtccagcag 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  31202961 tttccattcaatgtactacaaggaacttctatgtcttgccctcatgttgccggcattgcgggacttatcaaaacattgcatcctaattggagtccagcag 31203060  T
Q  401 ctattaaatcagctatcatgaccacaggt 429  Q
    |||||||||||||||||||||||||||||    
T  31203061 ctattaaatcagctatcatgaccacaggt 31203089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 194 - 425
Target Start/End: Complemental strand, 31062210 - 31061979
Alignment:
Q  194 tttgttttttgtttcagcctgatgtaactgcaccaggtgtgaacatacttgctgcctattcgttgtacgcaagtgcatctaatttaataacagacaatcg 293  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||  || ||||||||||||||| |||||||||||||    
T  31062210 tttgttttttgtttcagcctgatgtaactgcacctggtgtgaacatacttgctgcctattcattgtttgctagtgcatctaatttactaacagacaatcg 31062111  T
Q  294 caacaattttccattcaatgtactacaaggaacttctatgtcttgccctcatgttgccggcattgcgggacttatcaaaacaaagcatcctaattggagt 393  Q
    |     |||||| ||||||||| | |||||||||||||||||||||||||||||||| || | ||| |||||||||||||||   |||||||||||||||    
T  31062110 ccgaggttttcccttcaatgtaatgcaaggaacttctatgtcttgccctcatgttgctgggactgctggacttatcaaaacacttcatcctaattggagt 31062011  T
Q  394 ccagcagctattaaatcagctatcatgaccac 425  Q
    ||||||||||||||||||||||| ||||||||    
T  31062010 ccagcagctattaaatcagctattatgaccac 31061979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 194 - 429
Target Start/End: Complemental strand, 31049887 - 31049652
Alignment:
Q  194 tttgttttttgtttcagcctgatgtaactgcaccaggtgtgaacatacttgctgcctattcgttgtacgcaagtgcatctaatttaataacagacaatcg 293  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||  |||||||  ||||||||| |||||||||||||    
T  31049887 tttgttttttgtttcagcctgatgtaactgcgccgggtgtgaacatacttgctgcctattcattgtttgcaagtgtgtctaatttagtaacagacaatcg 31049788  T
Q  294 caacaattttccattcaatgtactacaaggaacttctatgtcttgccctcatgttgccggcattgcgggacttatcaaaacaaagcatcctaattggagt 393  Q
          ||||||||||||| ||| ||||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||||   |||||||||||||||    
T  31049787 tcgaggttttccattcaatatacaacaaggaacttctatgtcttgtcctcatgttgctggcactgctggacttatcaaaacacttcatcctaattggagt 31049688  T
Q  394 ccagcagctattaaatcagctatcatgaccacaggt 429  Q
    ||||||||||||||||||||||| ||||||||||||    
T  31049687 ccagcagctattaaatcagctattatgaccacaggt 31049652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 194 - 425
Target Start/End: Complemental strand, 31162783 - 31162552
Alignment:
Q  194 tttgttttttgtttcagcctgatgtaactgcaccaggtgtgaacatacttgctgcctattcgttgtacgcaagtgcatctaatttaataacagacaatcg 293  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||   |||||||  ||||||||| |||||||||||||    
T  31162783 tttgttttttgtttcagcctgatgtaactgcgccgggtgtgaacatacttgctgcctattcattgcttgcaagtgtgtctaatttagtaacagacaatcg 31162684  T
Q  294 caacaattttccattcaatgtactacaaggaacttctatgtcttgccctcatgttgccggcattgcgggacttatcaaaacaaagcatcctaattggagt 393  Q
          ||||||||||||| ||| ||||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||||   |||||||||||||||    
T  31162683 tcgaggttttccattcaatatacaacaaggaacttctatgtcttgtcctcatgttgctggcactgctggacttatcaaaacacttcatcctaattggagt 31162584  T
Q  394 ccagcagctattaaatcagctatcatgaccac 425  Q
    ||||||||||||||||||||||||||||||||    
T  31162583 ccagcagctattaaatcagctatcatgaccac 31162552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 194 - 425
Target Start/End: Complemental strand, 31144959 - 31144728
Alignment:
Q  194 tttgttttttgtttcagcctgatgtaactgcaccaggtgtgaacatacttgctgcctattcgttgtacgcaagtgcatctaatttaataacagacaatcg 293  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||   |||||||  ||||||||| |||||||||||||    
T  31144959 tttgttttttgtttcagcctgatgtaactgcgccgggtgtgaacatacttgctgcctattcattgcttgcaagtgtgtctaatttagtaacagacaatcg 31144860  T
Q  294 caacaattttccattcaatgtactacaaggaacttctatgtcttgccctcatgttgccggcattgcgggacttatcaaaacaaagcatcctaattggagt 393  Q
          ||||||||||||| ||| ||||||||||||||||||||| ||||||||||  |||| ||| |||||||||||||||   |||||||||||||||    
T  31144859 tcgaggttttccattcaatatacaacaaggaacttctatgtcttgtcctcatgttgttggcactgctggacttatcaaaacacttcatcctaattggagt 31144760  T
Q  394 ccagcagctattaaatcagctatcatgaccac 425  Q
    || |||||||||||||||||||||||||||||    
T  31144759 cctgcagctattaaatcagctatcatgaccac 31144728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 198 - 425
Target Start/End: Complemental strand, 31107377 - 31107150
Alignment:
Q  198 ttttttgtttcagcctgatgtaactgcaccaggtgtgaacatacttgctgcctattcgttgtacgcaagtgcatctaatttaataacagacaatcgcaac 297  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||  |||||||||||||||||||||||||||| |||        
T  31107377 tttttcgtttcagcctgatgtaactgcgccaggtgtgaacatactcgctgcctattcattgtttgcaagtgcatctaatttaataacagacactcgtcga 31107278  T
Q  298 aattttccattcaatgtactacaaggaacttctatgtcttgccctcatgttgccggcattgcgggacttatcaaaacaaagcatcctaattggagtccag 397  Q
      |||||||||||||||| | |||||||||||||||||||| || ||||||||||||| ||| ||| | |||||||||   |||||||||||||||||||    
T  31107277 ggttttccattcaatgtaatgcaaggaacttctatgtcttgtccacatgttgccggcactgctggattaatcaaaacacttcatcctaattggagtccag 31107178  T
Q  398 cagctattaaatcagctatcatgaccac 425  Q
    ||||||||||||| ||||| ||||||||    
T  31107177 cagctattaaatcggctataatgaccac 31107150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 31145116 - 31145031
Alignment:
Q  34 atggaagaaagccagctccagttatggcttcattctcatctagaggaccaaataaaattcagccatcaatactcaaggtgtatata 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||  ||||||||||||| ||||    
T  31145116 atggaagaaagccagctccagttatggcttcattctcatctagaggaccaaataaagttcaaccatatatactcaaggtgtttata 31145031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 31162940 - 31162855
Alignment:
Q  34 atggaagaaagccagctccagttatggcttcattctcatctagaggaccaaataaaattcagccatcaatactcaaggtgtatata 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||  ||||||||||||| ||||    
T  31162940 atggaagaaagccagctccagttatggcttcattctcatctagaggaccaaatcaagttcaaccatatatactcaaggtgtttata 31162855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 31050041 - 31049959
Alignment:
Q  37 gaagaaagccagctccagttatggcttcattctcatctagaggaccaaataaaattcagccatcaatactcaaggtgtatata 119  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||  ||||||||||||| ||||    
T  31050041 gaagaaaaccagctccagttatggcttcattctcatctagaggaccaaatcaagttcagccatatatactcaaggtgtttata 31049959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 31062544 - 31062450
Alignment:
Q  20 agcaaaaacactctatggaagaaagccagctccagttatggcttcattctcatctagaggaccaaataaaattcagccatcaatactcaaggtgt 114  Q
    ||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||| ||||  |||||||||||||    
T  31062544 agcaataacactcattggaagaaagccagctccagttatggcttcattctcatctagaggtccaaatcaagttcaaccatatatactcaaggtgt 31062450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 31107533 - 31107456
Alignment:
Q  37 gaagaaagccagctccagttatggcttcattctcatctagaggaccaaataaaattcagccatcaatactcaaggtgt 114  Q
    |||||||||||||||||||||||||||| | ||| |||||||||||||||||| |||| |||||||||||||||||||    
T  31107533 gaagaaagccagctccagttatggcttcctactcttctagaggaccaaataaagttcaaccatcaatactcaaggtgt 31107456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 322 - 425
Target Start/End: Original strand, 42315247 - 42315350
Alignment:
Q  322 ggaacttctatgtcttgccctcatgttgccggcattgcgggacttatcaaaacaaagcatcctaattggagtccagcagctattaaatcagctatcatga 421  Q
    |||||||||||| | |||||||||||  | ||||| || || ||| ||||||||   |||||||| ||||||||||||||||| ||||||||||| ||||    
T  42315247 ggaacttctatggcatgccctcatgtgtctggcatagcaggccttctcaaaacacttcatcctaaatggagtccagcagctatcaaatcagctattatga 42315346  T
Q  422 ccac 425  Q
    ||||    
T  42315347 ccac 42315350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 422
Target Start/End: Complemental strand, 37016467 - 37016363
Alignment:
Q  318 acaaggaacttctatgtcttgccctcatgttgccggcattgcgggacttatcaaaacaaagcatcctaattggagtccagcagctattaaatcagctatc 417  Q
    |||||||||||| |||||||| ||||||||||| |||||||  || ||| |||| |||   ||||||| |||||||||||| || || ||||| || |||    
T  37016467 acaaggaacttcaatgtcttgtcctcatgttgctggcattgtcggtcttctcaagacacttcatcctagttggagtccagctgccatcaaatctgccatc 37016368  T
Q  418 atgac 422  Q
    |||||    
T  37016367 atgac 37016363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 422
Target Start/End: Original strand, 24268665 - 24268766
Alignment:
Q  321 aggaacttctatgtcttgccctcatgttgccggcattgcgggacttatcaaaacaaagcatcctaattggagtccagcagctattaaatcagctatcatg 420  Q
    |||||||||||| || |||||||||||| | | |||||  |  ||| |||||||||   |||||||||||||||| |||||| ||||||| |||||||||    
T  24268665 aggaacttctatatcatgccctcatgtttctgccattgttgctcttctcaaaacaatttatcctaattggagtcctgcagcttttaaatctgctatcatg 24268764  T
Q  421 ac 422  Q
    ||    
T  24268765 ac 24268766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 429
Target Start/End: Original strand, 42736248 - 42736298
Alignment:
Q  379 catcctaattggagtccagcagctattaaatcagctatcatgaccacaggt 429  Q
    |||||| ||||||||||||||||||| || ||||| |||||||||||||||    
T  42736248 catcctgattggagtccagcagctatcaagtcagcaatcatgaccacaggt 42736298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 429
Target Start/End: Complemental strand, 42768199 - 42768149
Alignment:
Q  379 catcctaattggagtccagcagctattaaatcagctatcatgaccacaggt 429  Q
    |||||| ||||||||||||| |||||||| || || |||||||||||||||    
T  42768199 catcctgattggagtccagctgctattaagtccgcgatcatgaccacaggt 42768149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 414
Target Start/End: Complemental strand, 8132938 - 8132910
Alignment:
Q  386 attggagtccagcagctattaaatcagct 414  Q
    |||||||||||||||||||||||||||||    
T  8132938 attggagtccagcagctattaaatcagct 8132910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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