View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7325_low_16 (Length: 405)
Name: NF7325_low_16
Description: NF7325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7325_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 21 - 315
Target Start/End: Original strand, 52241727 - 52242020
Alignment:
| Q |
21 |
atggatgcaccacattgccattttgttagcttttagcaattcaattttagcttttaaaaaatacaaactacaagtaactagatactactttagattttta |
120 |
Q |
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| T |
52241727 |
atggatgcaccacattgccattttgttagcttttagcaattcaattttagcttttaaaaaatacaaactacaagtaactagatactactttagattttta |
52241826 |
T |
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| Q |
121 |
gcaaatcatcgcctaaagttttaattttagtatacacaaagttcactaagaaggtaacaagtgagaatacaagggnnnnnnnagttttaacaagtgagat |
220 |
Q |
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| T |
52241827 |
gcaaatcatcgcctaaagttttaattttagtatacacaaagttcactaagaaggtaacaagtgagaatacaaggg-ttttttagttttaacaagtgagat |
52241925 |
T |
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| Q |
221 |
tacaaagttcacgcattgtgcaccaaccaattgcgctagacatgcattgttatagatttttgtgtaagttattttaaaagtaactatatatatat |
315 |
Q |
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| T |
52241926 |
tacaaagttcacgcattgtgcaccaaccaattgcgatagacatgcattgttatagatttttgtgtaagttattttaaaagtaaatatatatatat |
52242020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 305 - 400
Target Start/End: Original strand, 52242046 - 52242146
Alignment:
| Q |
305 |
tatatatatattacattgatcgtatcagaagagaaaatgaattagacatgtagtgtcaatg-----tagttttacattgacatccaatgagaataatata |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
52242046 |
tatatatatattacattgatcgtatcagaagagaaaatgaattagacatgtactgtcaatgtaaactagttttacattgacatccaatgagaataaaata |
52242145 |
T |
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| Q |
400 |
c |
400 |
Q |
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| T |
52242146 |
c |
52242146 |
T |
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