View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7325_low_17 (Length: 399)
Name: NF7325_low_17
Description: NF7325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7325_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 187 - 380
Target Start/End: Complemental strand, 50440515 - 50440322
Alignment:
| Q |
187 |
gtaatggatgctttagtaaatgtagatgtcaggtatagaaagtatacaattgaggaaattgaagctgcaacaaannnnnnnncacaatccctcaagattg |
286 |
Q |
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| T |
50440515 |
gtaatggatgctttagtaaatgtagatgtcaggtatagaaagtatacaattgaggaaattgaagctgcaacaaattttttttcacaatccctcaagattg |
50440416 |
T |
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| Q |
287 |
gagaaggaggatatggtccagtttttaagtgccttctggaccatacacctgttgcagtcaaggttctacgccccgatgcagcacaaggacgatc |
380 |
Q |
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| T |
50440415 |
gagaaggaggatatggtccagtttttaagtgccttctggaccatacacctgttgcagtcaaggttctacgccccgatgcagcacaaggacgatc |
50440322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 50440701 - 50440588
Alignment:
| Q |
1 |
gaaaggagattggaagaggcaaggatggccgaggaatctgcattggcaattgcagaaaaggagaaagaaaaatctaaagcagccattgaggccgctgaag |
100 |
Q |
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| T |
50440701 |
gaaaggagattggaagaggcaaggatggccgaggaatctgcattggcaattgcagaaaaggagaaagaaaaatctaaagcagccattgaggccgctgaag |
50440602 |
T |
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| Q |
101 |
cacaaaaaaggata |
114 |
Q |
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| T |
50440601 |
cacaaaaaaggata |
50440588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 1273010 - 1273112
Alignment:
| Q |
4 |
aggagattggaagaggcaaggatggccgaggaatctgcattggcaattgcagaaaaggagaaagaaaaatctaaagcagccattgaggccgctgaagcac |
103 |
Q |
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| T |
1273010 |
aggagattggaggaggcaagaatggctgaagaatctgcattggctgtagcagaaatggaaaaggcaaaatcaaaagcagcaattgaagctgctgaagcac |
1273109 |
T |
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| Q |
104 |
aaa |
106 |
Q |
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||| |
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| T |
1273110 |
aaa |
1273112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 280 - 375
Target Start/End: Original strand, 1273286 - 1273381
Alignment:
| Q |
280 |
aagattggagaaggaggatatggtccagtttttaagtgccttctggaccatacacctgttgcagtcaaggttctacgccccgatgcagcacaagga |
375 |
Q |
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| T |
1273286 |
aagattggagaaggtggttatggtcccgtttataaatgtcttctagaccatactcctgtcgcagttaaagttctccgtcctgatgcacaacaagga |
1273381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 254
Target Start/End: Original strand, 1273216 - 1273260
Alignment:
| Q |
210 |
agatgtcaggtatagaaagtatacaattgaggaaattgaagctgc |
254 |
Q |
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| T |
1273216 |
agatgtgaggtatagaaggtatgcaattgaggagattgaagctgc |
1273260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 21001395 - 21001433
Alignment:
| Q |
272 |
aatccctcaagattggagaaggaggatatggtccagttt |
310 |
Q |
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| T |
21001395 |
aatccttcaagattggagaaggaggatttggtccagttt |
21001433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 21009972 - 21009934
Alignment:
| Q |
272 |
aatccctcaagattggagaaggaggatatggtccagttt |
310 |
Q |
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| T |
21009972 |
aatccttcaagattggagaaggaggatttggtccagttt |
21009934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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