View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7325_low_18 (Length: 395)

Name: NF7325_low_18
Description: NF7325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7325_low_18
NF7325_low_18
[»] chr6 (8 HSPs)
chr6 (16-383)||(33525018-33525399)
chr6 (118-269)||(33521809-33521959)
chr6 (277-352)||(33521708-33521782)
chr6 (26-110)||(33523997-33524081)
chr6 (32-168)||(20788768-20788904)
chr6 (276-346)||(33526026-33526097)
chr6 (301-342)||(33524552-33524593)
chr6 (32-180)||(8534159-8534307)
[»] chr2 (1 HSPs)
chr2 (32-168)||(15049319-15049455)
[»] chr3 (1 HSPs)
chr3 (32-149)||(49960391-49960508)


Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 16 - 383
Target Start/End: Complemental strand, 33525399 - 33525018
Alignment:
Q  16 atggcaaacgggaatttcatacttattttttaattatgtggtgtctaaagtaacgacttcaccaaaatattagtacacaacccaccatcttggatctgtc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33525399 atggcaaacgggaatttcatacttattttttaattatgtggtgtctaaagtaacgacttcaccaaaatattagtacacaacccaccatcttggatctgtc 33525300  T
Q  116 taaaatacattttgtaaacgacttctatcatccatgcccattacataataaaactggctcttttgtttctaacaaaatagtttttaattgtttccacatc 215  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  33525299 taaaatacattttgtaaacgacttctatcatccatgcctattacataataaaactagctcttttgtttctaacaaaatagttttgaattgtttccacatc 33525200  T
Q  216 tcaaatcctaagtcgtggttttcttatttcatctatataatttctacagtctttctc--------------tctctatttgctgccgcaactaaatatca 301  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||              |||||||||||||||||||||||||||||    
T  33525199 tcaaatcctaagtcgtggttttcttattttatctatataatttctacagtctttctctctaaatttaagattctctatttgctgccgcaactaaatatca 33525100  T
Q  302 aaatttctgctaacattaatcccaacttaattattgagttccaacctttatttgtatctccccataaagaggaaactgatga 383  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||    
T  33525099 aaatttctcctaacattaatcccaacttaattattgagttctaacctttatttgtatctccctataaagaggaaactaatga 33525018  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 118 - 269
Target Start/End: Complemental strand, 33521959 - 33521809
Alignment:
Q  118 aaatacattttgtaaacgacttctatcatccatgcccattacataataaaactggctcttttgtttctaacaaaatagtttttaattgtttccacatctc 217  Q
    ||||||||||||||||| |||| ||||| | ||||| |||||||||||||| || || |||| ||||||||||||||| ||| || ||||||  ||||||    
T  33521959 aaatacattttgtaaacaacttttatcaccgatgcc-attacataataaaattgactattttatttctaacaaaatagatttaaactgtttcagcatctc 33521861  T
Q  218 aaatcctaagtcgtggttttcttatttcatctatataatttctacagtcttt 269  Q
      || | |||| |||||||||||| || || ||||| ||||||||| |||||    
T  33521860 ccattccaagttgtggttttcttactttatttatatgatttctacaatcttt 33521809  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 277 - 352
Target Start/End: Complemental strand, 33521782 - 33521708
Alignment:
Q  277 tatttgctgccgcaactaaatatcaaaatttctgctaacattaatcccaacttaattattgagttccaacctttat 352  Q
    ||||||||||| ||| |||| |||||||||||| |||||||||||||||||||||| ||| |||||||||||||||    
T  33521782 tatttgctgccacaattaaa-atcaaaatttctactaacattaatcccaacttaatcattaagttccaacctttat 33521708  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 33524081 - 33523997
Alignment:
Q  26 ggaatttcatacttattttttaattatgtggtgtctaaagtaacgacttcaccaaaatattagtacacaacccaccatcttggat 110  Q
    ||||| |||||||||||| ||| ||||||||| || |||||||||| |||||||||||||| ||| ||| ||||| |||||||||    
T  33524081 ggaatgtcatacttatttcttagttatgtggtatcaaaagtaacgatttcaccaaaatattcgtaaacagcccacgatcttggat 33523997  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 32 - 168
Target Start/End: Original strand, 20788768 - 20788904
Alignment:
Q  32 tcatacttattttttaattatgtggtgtctaaagtaacgacttcaccaaaatattagtacacaacccaccatcttggatctgtctaaaatacattttgta 131  Q
    ||||| |||||| |||| || |||||||| ||||| | |||||||||||||||||  ||  ||||||  ||||||| ||||| | |||| ||||||||||    
T  20788768 tcatatttatttgttaagtaagtggtgtcgaaagttatgacttcaccaaaatattcatatgcaaccctacatcttgcatctgcccaaaacacattttgta 20788867  T
Q  132 aacgacttctatcatccatgcccattacataataaaa 168  Q
    | ||| ||  ||||||||   |||| |||||||||||    
T  20788868 accgaatttcatcatccacatccatcacataataaaa 20788904  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 276 - 346
Target Start/End: Original strand, 33526026 - 33526097
Alignment:
Q  276 ctatttgctgccgcaactaaatatc-aaaatttctgctaacattaatcccaacttaattattgagttccaac 346  Q
    ||||||| |||  |||||||| ||| |||||||||||| |||||||||||||||||||  |||| |||||||    
T  33526026 ctatttgttgcaacaactaaagatcgaaaatttctgcttacattaatcccaacttaatccttgaattccaac 33526097  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 342
Target Start/End: Original strand, 33524552 - 33524593
Alignment:
Q  301 aaaatttctgctaacattaatcccaacttaattattgagttc 342  Q
    |||||||||||| |||||||| |||||||||| |||||||||    
T  33524552 aaaatttctgcttacattaattccaacttaataattgagttc 33524593  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 180
Target Start/End: Original strand, 8534159 - 8534307
Alignment:
Q  32 tcatacttattttttaattatgtggtgtctaaagtaacgacttcaccaaaatattagtacacaacccaccatcttggatctgtctaaaatacattttgta 131  Q
    ||||| || ||| |||| || |||||||| ||||| |||||||||||||| ||||  ||  || |||  ||||||| ||||| | | |||||||||  ||    
T  8534159 tcatatttgtttgttaaataagtggtgtcaaaagttacgacttcaccaaagtattcatatgcagccctacatcttgcatctgcccagaatacatttctta 8534258  T
Q  132 aacgacttctatcatccatgcccattacataataaaactggctcttttg 180  Q
    |||| ||   ||||||||   ||||||||||||||||||| || |||||    
T  8534259 aacggctatcatcatccacatccattacataataaaactgactattttg 8534307  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 168
Target Start/End: Original strand, 15049319 - 15049455
Alignment:
Q  32 tcatacttattttttaattatgtggtgtctaaagtaacgacttcaccaaaatattagtacacaacccaccatcttggatctgtctaaaatacattttgta 131  Q
    ||||| |||||| |||| || |||||||| ||||| | |||||||||||||||||  ||  ||||||  ||||||| ||||| | |||| ||||||||||    
T  15049319 tcatatttatttgttaagtaagtggtgtcgaaagttatgacttcaccaaaatattcatatgcaaccctacatcttgcatctgcccaaaacacattttgta 15049418  T
Q  132 aacgacttctatcatccatgcccattacataataaaa 168  Q
    | ||||||  ||||||||   |||| |||||||||||    
T  15049419 accgactttcatcatccacatccatcacataataaaa 15049455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 149
Target Start/End: Complemental strand, 49960508 - 49960391
Alignment:
Q  32 tcatacttattttttaattatgtggtgtctaaagtaacgacttcaccaaaatattagtacacaacccaccatcttggatctgtctaaaatacattttgta 131  Q
    ||||| |||||| |||| || |||||||| ||||| | |||||||||||||||||  ||  ||||||  ||||||| ||||| | |||| |||||| |||    
T  49960508 tcatatttatttgttaaataagtggtgtcgaaagttatgacttcaccaaaatattcatatgcaaccctacatcttgcatctgcccaaaacacatttcgta 49960409  T
Q  132 aacgacttctatcatcca 149  Q
    | ||||||  ||||||||    
T  49960408 atcgactttcatcatcca 49960391  T

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