View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7325_low_2 (Length: 1217)
Name: NF7325_low_2
Description: NF7325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7325_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 1082; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 1082; E-Value: 0
Query Start/End: Original strand, 19 - 1202
Target Start/End: Original strand, 36221906 - 36223089
Alignment:
| Q |
19 |
atagtagtactagtatatgttttatcatcaaataagaatatgtgtgtacatttcataaaatggataagcaaattggtcctcgaaattgtatttagctgtc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36221906 |
atagtagtactagtatatgttttatcatcaaataagaatatgtgtgtacatttcataaaatggataagcaaattggtcctcgaaattgtatttagctgtc |
36222005 |
T |
|
| Q |
119 |
aaaatattctctgatttttgtgaattggtaaatatacatccctaaaactgaaaagtgtcaatcaaaatagtttctctaacttttattattaaggactatg |
218 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36222006 |
aaaataatctctgatttttgtgaattggtaaatatacatccctaaaactgaaaagtgtcaatcaaaatagtttctctaacttttattattaaggactatg |
36222105 |
T |
|
| Q |
219 |
acatgctgaaaatatggtcctacgttgatcccacatcaatgacacaaaatcatgaactaatttgcctatgtaatttatgtctctcgaaacgaatttgttg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36222106 |
acatgctgaaaatatggtcctacgttgatcccacatcaatgacacaaaatcatgaactaatttgcctatgtaatttatgtctctcgaaacgaatttgttg |
36222205 |
T |
|
| Q |
319 |
gtaattagccaatgcatgattgcaatcaccgataaattagtccctataagttggtctaaatttcgtagtgagattagtcattggcgagctgacattgatg |
418 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36222206 |
gtaattagtcaatgcatgattgcaatcaccgataaattagtccctataagttggtctaaatttcgtagtgagattagtcattggcgagctggcattgatg |
36222305 |
T |
|
| Q |
419 |
tgtgatcaatgtgtaatgtgacatgttcaattatatgtcatagcctataatgttggaagttaacagagagctcattttgaatgacatttgaaattccgag |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
36222306 |
tgtgatcaatgtgtaatgtgacatgttcaattatatgtcatagcctataatgttggaagttaatagagagctcattttgaatgacatttgaaattccgag |
36222405 |
T |
|
| Q |
519 |
aaccaattcaaacatcaaaaacctactatgactatgttgctgaaatatgatgaacttgatttaattttgtctttgcagtattagttgtgaagtgggaaga |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
36222406 |
aaccaattcaaacatcaaaaacctactatgactatgttgctgaaatatgatgaacttgatttaattttgtctttgcagtattagttgtgaagtaggaaga |
36222505 |
T |
|
| Q |
619 |
aataaaagcaactaaactaagatatgccannnnnnnnatggtgaaaaaagttgaatgtgtatatgaactgaagaacctaccaagatagccccaagagggt |
718 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36222506 |
aataaaagcaactaaactaagatatgccattttttttatggtgaaaaaagttgaatgtgtatatgaactgaagaacctaccaagatagccccaagagggt |
36222605 |
T |
|
| Q |
719 |
caagccaccaatagaatttgatggctagcactgccgtggctagaccaattgagtttgtaatgacatcaaagaaatggtcttgagcataggctctaactat |
818 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36222606 |
caagccaccaatagaatttgatggctagcactgccgtggctagaccaatcgagtttgtaatgacatcaaagaaatggtcttgagcataggctctaactat |
36222705 |
T |
|
| Q |
819 |
ttcatttttgaacctgcgacagtatgtcatcagcccaatttttacaactgtggctgtcaccataattcctatcatccacttttctttcacaggatcccta |
918 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36222706 |
ttcatttttgaacctgcgacagtatgtcatcagcccaatttttacaactgtggctgtcaccataattcctatcatccacttttctttcacaggatcccta |
36222805 |
T |
|
| Q |
919 |
tcaggttgagcctgcnnnnnnntaaatttgaaataggtaaatcttgagtagtgtctttgcattaatacacttgagtttatagaatctattagacagtggt |
1018 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36222806 |
tcaggttgagcctgtaaaaaaataaatttgaaataggtaaatcttgagtagtgtctttgcattaatacacttgagtttatagaatctattagacagtggt |
36222905 |
T |
|
| Q |
1019 |
atttaactaggattcagattctctgccacgatgcagcggtgcaacaatttctttttcgtgttaaaaaggactaccacgtgaagtggtatgttgtcctagt |
1118 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36222906 |
atttaactaggattcagattctctcccacgatgcagcggtgcaacaatttctttttcatgttaaaaaggactaccacgtgaagtggtatgttgtcctagt |
36223005 |
T |
|
| Q |
1119 |
tnnnnnnntatcgcagcgttgcatcatggaagtggatacgaatccatttagatatactttttacttttctacctttacaatgat |
1202 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36223006 |
taaaaaaatatcgcagcgttgcatcatggaagtggatacgaatccatttagatatactttttacttttctacctttacaatgat |
36223089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 5e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 841 - 889
Target Start/End: Original strand, 6577878 - 6577926
Alignment:
| Q |
841 |
tatgtcatcagcccaatttttacaactgtggctgtcaccataattccta |
889 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6577878 |
tatgtcatgagcccaatttttacaactgtggctgtcaccataattccta |
6577926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 841 - 889
Target Start/End: Complemental strand, 22637335 - 22637287
Alignment:
| Q |
841 |
tatgtcatcagcccaatttttacaactgtggctgtcaccataattccta |
889 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
22637335 |
tatgtcatgagcccaatttttacaactttggctgtcaccataattccta |
22637287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 841 - 889
Target Start/End: Original strand, 276650 - 276698
Alignment:
| Q |
841 |
tatgtcatcagcccaatttttacaactgtggctgtcaccataattccta |
889 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
276650 |
tatgtcatgagcccaatttttacaactgtggctgtcaccataattccta |
276698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 841 - 889
Target Start/End: Original strand, 29709525 - 29709573
Alignment:
| Q |
841 |
tatgtcatcagcccaatttttacaactgtggctgtcaccataattccta |
889 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29709525 |
tatgtcatgagcccaatttttacaactgtggctgtcaccataattccta |
29709573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 841 - 888
Target Start/End: Complemental strand, 871559 - 871512
Alignment:
| Q |
841 |
tatgtcatcagcccaatttttacaactgtggctgtcaccataattcct |
888 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
871559 |
tatgtcatgagcccaatttttacaactgtggctgtcaccataattcct |
871512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 841 - 889
Target Start/End: Original strand, 25127620 - 25127668
Alignment:
| Q |
841 |
tatgtcatcagcccaatttttacaactgtggctgtcaccataattccta |
889 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
25127620 |
tatgtcatgagcccaatttttacaactgtggttgtcaccataattccta |
25127668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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