View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7325_low_20 (Length: 391)
Name: NF7325_low_20
Description: NF7325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7325_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 16 - 374
Target Start/End: Complemental strand, 48467032 - 48466674
Alignment:
| Q |
16 |
atgttgtcgatatgcatattttagtagttaatgtgatatctagtttaggtcgtgtaagattttttagatcaaacagagaaaattaggttctatacatgct |
115 |
Q |
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| T |
48467032 |
atgttgtcgatatgcatattttagtagttaatgtgatatctagtttaggtcgtgtaagattttttagatcaaacagagaaaattaggttctatacatgct |
48466933 |
T |
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| Q |
116 |
aatatgatgtgctcatcaccctgtttaagcattgatagtgtggaaattttgggactatatcaagcaatgtcacagatgatgcatagttttcactcttgta |
215 |
Q |
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| T |
48466932 |
aatatgatgtgctcatcaccctgtttaagcattgataatgtggaaattttgggactatatcaagcaatgtcacagatgatgcatagttttcactcttgta |
48466833 |
T |
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| Q |
216 |
aagaaattgtttctcagttcgatcggttacgtcttagatgaatgtagaactttatgtatagtcttcattttgaaaacactcatgttgaattccatagacg |
315 |
Q |
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| T |
48466832 |
aagaaattgtttctcagttcgatcggttacgtcttagatgaatgtagaactttatgtatagtctttattttgaaaacactcatgttgaattccatagacg |
48466733 |
T |
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| Q |
316 |
gaaaataaaaatggttgatatacaagctcacaatactatacaagctaaaaggtgcaagt |
374 |
Q |
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| T |
48466732 |
gaaaataaatatggttgatatacaagctcacaatactatacaagataaaaggtgcaagt |
48466674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 48475984 - 48475891
Alignment:
| Q |
20 |
tgtcgatatgcatattttagtagttaatgtgatatctagtttaggtcgtgtaagattttttagatcaaacagagaaaattaggttctatacatg |
113 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||| ||||||||| | || |||||||||||||||||||||||||| ||||||| |
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| T |
48475984 |
tgtcgataagcatattttagctcttaatgtgatatctagtttaagtcgtgtaacacttcttagatcaaacagagaaaattaggtttaatacatg |
48475891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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