View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7325_low_26 (Length: 335)
Name: NF7325_low_26
Description: NF7325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7325_low_26 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 318
Target Start/End: Complemental strand, 26126869 - 26126568
Alignment:
| Q |
17 |
tatatttgcagaatccttttgatcatctataccgtgattcggatgtagagtccatgagtgatggccatgataacatgacaacttatggctacaacgatgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||| |||||||| |
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| T |
26126869 |
tatatttgcagaatccttttgatcatctataccgtgattcggatgtagagtccatgagcgatggtcatgataacatgacagcttatggctttaacgatgt |
26126770 |
T |
|
| Q |
117 |
cttcgacgaacctatgatgggttggtctcgtatcgtttttaccactaggatatgggtttacaattctggtttcttctatatcaggccaaccattccttca |
216 |
Q |
| |
|
||| ||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26126769 |
ctttgacgaacctctgatgggttggtctcgtatcgttcatacaactaggatatgggtttacaattctggtttcttctatatcagaccaaccattccttca |
26126670 |
T |
|
| Q |
217 |
attgagcttttggaccgtgtggctgcacgactttcaaaagagaatgcatgggaccaaggcgttttcaatgaggaactcttttatccgtcacatcctggtt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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|
| T |
26126669 |
attgagcttttggaccgtgtggctgcacgactttcaaaagagaatgcatgggaccaaggcgttttcaacgaggaactcttttatccgtcgcatcctggtt |
26126570 |
T |
|
| Q |
317 |
at |
318 |
Q |
| |
|
|| |
|
|
| T |
26126569 |
at |
26126568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 318
Target Start/End: Complemental strand, 26096925 - 26096624
Alignment:
| Q |
17 |
tatatttgcagaatccttttgatcatctataccgtgattcggatgtagagtccatgagtgatggccatgataacatgacaacttatggctacaacgatgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| |
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|
| T |
26096925 |
tatatttgcagaatccttttgatcatctataccgtgattcagatgttgagtccatgagtgatggtcatgataacatgacagcttatggttacaacgatgt |
26096826 |
T |
|
| Q |
117 |
cttcgacgaacctatgatgggttggtctcgtatcgtttttaccactaggatatgggtttacaattctggtttcttctatatcaggccaaccattccttca |
216 |
Q |
| |
|
||||||||| ||| ||||||||||||| || |||| ||||| ||||||| |||||||||| |||||||||||||||||| ||||||||||||||| |
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|
| T |
26096825 |
cttcgacgaccctgggatgggttggtctagtggtgtttataccaggaggatatttgtttacaattgtggtttcttctatatcagaccaaccattccttca |
26096726 |
T |
|
| Q |
217 |
attgagcttttggaccgtgtggctgcacgactttcaaaagagaatgcatgggaccaaggcgttttcaatgaggaactcttttatccgtcacatcctggtt |
316 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| || ||||| ||||||||||||| ||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
26096725 |
attgagcttttggaccgtgtggcagcacgactttcgaaggagaaagcatgggaccaagtcgttttcaacgaggaactcttttatccgtcgcatcctggtt |
26096626 |
T |
|
| Q |
317 |
at |
318 |
Q |
| |
|
|| |
|
|
| T |
26096625 |
at |
26096624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 318
Target Start/End: Complemental strand, 26120212 - 26119911
Alignment:
| Q |
17 |
tatatttgcagaatccttttgatcatctataccgtgattcggatgtagagtccatgagtgatggccatgataacatgacaacttatggctacaacgatgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
26120212 |
tatatttgcagaatccttttgatcatctataccgtgattcggatgttgagtccatgagcgatggtcataataacatgacagcttatggctacaacgatgt |
26120113 |
T |
|
| Q |
117 |
cttcgacgaacctatgatgggttggtctcgtatcgtttttaccactaggatatgggtttacaattctggtttcttctatatcaggccaaccattccttca |
216 |
Q |
| |
|
|||| |||| ||| ||||||||||||| || ||||||||||| ||||||| ||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26120112 |
cttcaacgaccctgggatgggttggtctagtggcgtttttaccaggaggatatttgtttacaatgctggtttcttctatatcagaccaaccattccttca |
26120013 |
T |
|
| Q |
217 |
attgagcttttggaccgtgtggctgcacgactttcaaaagagaatgcatgggaccaaggcgttttcaatgaggaactcttttatccgtcacatcctggtt |
316 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| || ||||| ||||||||||||| ||||||||| |||||||||||| |||| ||| ||||||||| |
|
|
| T |
26120012 |
attgagcttttggaccgtgtggcagcacgacttttgaaggagaaagcatgggaccaagtcgttttcaacgaggaactctttcatccatcatatcctggtt |
26119913 |
T |
|
| Q |
317 |
at |
318 |
Q |
| |
|
|| |
|
|
| T |
26119912 |
at |
26119911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 318
Target Start/End: Complemental strand, 26084650 - 26084349
Alignment:
| Q |
17 |
tatatttgcagaatccttttgatcatctataccgtgattcggatgtagagtccatgagtgatggccatgataacatgacaacttatggctacaacgatgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
26084650 |
tatatttgcagaatccttttgatcatttataccgtgattcggatgttgagtccatgagcgatggtcataataacatgacagcttatggctacaacgatgt |
26084551 |
T |
|
| Q |
117 |
cttcgacgaacctatgatgggttggtctcgtatcgtttttaccactaggatatgggtttacaattctggtttcttctatatcaggccaaccattccttca |
216 |
Q |
| |
|
|||| | || | | ||||||||||||| || ||||| |||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26084550 |
cttcaaagaccatgggatgggttggtctactaacgtttataccacgaggatatttgtttacaattctggtttcttctatatcagaccaaccattccttca |
26084451 |
T |
|
| Q |
217 |
attgagcttttggaccgtgtggctgcacgactttcaaaagagaatgcatgggaccaaggcgttttcaatgaggaactcttttatccgtcacatcctggtt |
316 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| || | |||||||||||||||| ||||||||| |||||||||||| |||| ||||||||||||| |
|
|
| T |
26084450 |
attgagcttttggaccgtgtggcagcacgactttcgaagggtaatgcatgggaccaagccgttttcaacgaggaactctttcatccatcacatcctggtt |
26084351 |
T |
|
| Q |
317 |
at |
318 |
Q |
| |
|
|| |
|
|
| T |
26084350 |
at |
26084349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 15 - 318
Target Start/End: Complemental strand, 26064927 - 26064624
Alignment:
| Q |
15 |
tatatatttgcagaatccttttgatcatctataccgtgattcggatgtagagtccatgagtgatggccatgataacatgacaacttatggctacaacgat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||| ||||||||||| ||||||||||||||||| |
|
|
| T |
26064927 |
tatatatttgcagaatccttttgatcatttataccgtgattcggatgttgagtccatgagcgatggtcataataacatgacagcttatggctacaacgat |
26064828 |
T |
|
| Q |
115 |
gtcttcgacgaacctatgatgggttggtctcgtatcgtttttaccactaggatatgggtttacaattctggtttcttctatatcaggccaaccattcctt |
214 |
Q |
| |
|
||| || || || |||||||||||||||| || ||| ||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
26064827 |
atctatgatgagcccgtgatgggttggtctcgaatagttcatacaactaggatatgggtttacaattctggtttcttctatattagaccaaccattcctt |
26064728 |
T |
|
| Q |
215 |
caattgagcttttggaccgtgtggctgcacgactttcaaaagagaatgcatgggaccaaggcgttttcaatgaggaactcttttatccgtcacatcctgg |
314 |
Q |
| |
|
|||||||||||||||| |||||||| ||| | ||||| || ||||| ||||||||||||| |||||| || ||||||||||||||||| || |||||||| |
|
|
| T |
26064727 |
caattgagcttttggatcgtgtggcggcaaggctttccaaggagaaagcatgggaccaagccgtttttaacgaggaactcttttatccatcgcatcctgg |
26064628 |
T |
|
| Q |
315 |
ttat |
318 |
Q |
| |
|
|||| |
|
|
| T |
26064627 |
ttat |
26064624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 17 - 318
Target Start/End: Complemental strand, 26036277 - 26035976
Alignment:
| Q |
17 |
tatatttgcagaatccttttgatcatctataccgtgattcggatgtagagtccatgagtgatggccatgataacatgacaacttatggctacaacgatgt |
116 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| |||| ||||| |||||||| |
|
|
| T |
26036277 |
tatatttacagaatccttttgatcatctataccgtgattcagatgtcgagtccatgagtgatggccataataacatgacagcttacggctataacgatgt |
26036178 |
T |
|
| Q |
117 |
cttcgacgaacctatgatgggttggtctcgtatcgtttttaccactaggatatgggtttacaattctggtttcttctatatcaggccaaccattccttca |
216 |
Q |
| |
|
||||||||||||| |||||||||| |||| || | ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
26036177 |
cttcgacgaacctgcgatgggttgggctcgatacgctcataccatgaggatatgggtttacaattccggtttcttctatatcagaccaaccattccttca |
26036078 |
T |
|
| Q |
217 |
attgagcttttggaccgtgtggctgcacgactttcaaaagagaatgcatgggaccaaggcgttttcaatgaggaactcttttatccgtcacatcctggtt |
316 |
Q |
| |
|
|||||||||||||||||||| || |||| ||||| || ||| |||||||||||||| ||||||||| |||||||| |||||||||||||| ||||||| |
|
|
| T |
26036077 |
attgagcttttggaccgtgtcgcgacacggctttccaaggaggttgcatgggaccaagccgttttcaacgaggaactattttatccgtcacaccctggtt |
26035978 |
T |
|
| Q |
317 |
at |
318 |
Q |
| |
|
|| |
|
|
| T |
26035977 |
at |
26035976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 209 - 318
Target Start/End: Complemental strand, 6773406 - 6773297
Alignment:
| Q |
209 |
ttccttcaattgagcttttggaccgtgtggctgcacgactttcaaaagagaatgcatgggaccaaggcgttttcaatgaggaactcttttatccgtcaca |
308 |
Q |
| |
|
|||||||||||||||||||||| || || || | || ||||| |||||||| |||||||| |||| ||||| ||||| ||||| ||||| || ||||| |
|
|
| T |
6773406 |
ttccttcaattgagcttttggatcgcgttgcggaccggctttctaaagagaaagcatgggatcaagcagtttttaatgaagaacttttttacccttcaca |
6773307 |
T |
|
| Q |
309 |
tcctggttat |
318 |
Q |
| |
|
|||||||||| |
|
|
| T |
6773306 |
tcctggttat |
6773297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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