View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7325_low_27 (Length: 327)
Name: NF7325_low_27
Description: NF7325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7325_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 164 - 308
Target Start/End: Original strand, 41346286 - 41346430
Alignment:
| Q |
164 |
aatcaccttatatttctacattttgaacgtatacgaaggattgggtatagtggacaggtgtaaggagttgcatttcatcatggtccatggagatggaggt |
263 |
Q |
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| T |
41346286 |
aatcaccttatatttctacattttgaacgtatacgaaggattgggtatagtggacaggtgtaaggagttgcatttcatcatggtccatggagatggaggt |
41346385 |
T |
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| Q |
264 |
gtaagactcaacatcctcaatagtataaagacattgtcaacgtcc |
308 |
Q |
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| T |
41346386 |
gtaagactcaacatcctcaatagtataaagacattgtcaacgtcc |
41346430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 41346149 - 41346209
Alignment:
| Q |
21 |
aaaaaagaaccggattcaattcatgtagtctgccatttgaaagatatctcaaccctctgat |
81 |
Q |
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| T |
41346149 |
aaaaaagaaccggattcaattcatgtagtctgccatttgaaagatatctcaaccctctgat |
41346209 |
T |
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