View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7325_low_28 (Length: 324)

Name: NF7325_low_28
Description: NF7325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7325_low_28
NF7325_low_28
[»] chr8 (1 HSPs)
chr8 (11-308)||(31659881-31660175)


Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 308
Target Start/End: Original strand, 31659881 - 31660175
Alignment:
Q  11 aatatataaaaattttgtatcgaaaatcttcctaacacgacgttaggatcagatgtgtgttctgctaataaaattgacggtgtaaatatattaaatgttc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31659881 aatatataaaaattttgtatcgaaaatcttcctaacacgacgttaggatcagatgtgtgttctgctaataaaattgacggtgtaaatatattagatgttc 31659980  T
Q  111 attctaggcgtgttctccgtgactcccccaacaacacttgctgccccttaagaacaatcttgagtcttgactagtcagttcatacatatattacacggtc 210  Q
    ||||||||||||||||| |||||| ||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||    
T  31659981 attctaggcgtgttctctgtgact-ccctaacaacacgtgctgccccttaagaacaatattgagtcttgactagtcagttcatac--atattacacggtc 31660077  T
Q  211 actccaaaagcgtacgaccttaggttaggggagttgttacatacataatttgacatcaaaactttggatctttctacaccacatattgatgaattatt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31660078 actccaaaagcgtacgaccttaggttaggggagttgttacatacataatttgacatcaaaactttggatctttctacaccacatattgatgaattatt 31660175  T

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