View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7325_low_30 (Length: 308)

Name: NF7325_low_30
Description: NF7325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7325_low_30
NF7325_low_30
[»] chr4 (8 HSPs)
chr4 (164-292)||(17139373-17139499)
chr4 (177-290)||(17344972-17345088)
chr4 (18-64)||(17139550-17139596)
chr4 (18-55)||(44561433-44561470)
chr4 (91-139)||(17139451-17139499)
chr4 (18-54)||(21472587-21472623)
chr4 (18-54)||(34154505-34154541)
chr4 (21-53)||(48256669-48256701)
[»] chr8 (1 HSPs)
chr8 (20-55)||(4866368-4866403)
[»] chr3 (1 HSPs)
chr3 (17-46)||(9582490-9582519)
[»] chr2 (3 HSPs)
chr2 (20-53)||(19187328-19187361)
chr2 (22-54)||(3206747-3206779)
chr2 (20-52)||(19186683-19186715)
[»] chr1 (1 HSPs)
chr1 (18-55)||(19053992-19054029)
[»] chr6 (2 HSPs)
chr6 (22-54)||(8304747-8304779)
chr6 (22-54)||(34231728-34231760)


Alignment Details
Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 164 - 292
Target Start/End: Complemental strand, 17139499 - 17139373
Alignment:
Q  164 aatagtttaaatattttttctttctgcaaagaaaagcgcagtaactgcctacacttttcttttactttttgctttagaattagaacactgccatgtccta 263  Q
    |||| ||||||||||||| | |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17139499 aatattttaaatatttttccattctgcaaagaaaaac--agtaactgcctacacttttcttttactttttgctttagaattagaacactgtcatgtccta 17139402  T
Q  264 aagttattatataaagatgagtaatgttg 292  Q
    |||||||||||||||||||||||||||||    
T  17139401 aagttattatataaagatgagtaatgttg 17139373  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 290
Target Start/End: Complemental strand, 17345088 - 17344972
Alignment:
Q  177 ttttttctttctgcaaagaaaagcgcagtaactgcctacacttttcttttactttttgctttagaattagaacac-----tgccatgtcctaaagttatt 271  Q
    ||||| |||| |||||||||||||  ||| ||||   ||||||||||||||| ||||||||||||||||||||||     ||  ||||||||||||||||    
T  17345088 tttttcctttgtgcaaagaaaagc--agtcactggtaacacttttcttttaccttttgctttagaattagaacactgttatgtaatgtcctaaagttatt 17344991  T
Q  272 atataaagatgagtaatgt 290  Q
    |||||||||||| ||||||    
T  17344990 atataaagatgaataatgt 17344972  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 17139596 - 17139550
Alignment:
Q  18 tttctcagccttatgatatgtgtgaacaacaattttctgttctaatt 64  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||    
T  17139596 tttctcaaccttatgatatgtgtgaacaacaattttctattctaatt 17139550  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 44561433 - 44561470
Alignment:
Q  18 tttctcagccttatgatatgtgtgaacaacaattttct 55  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  44561433 tttctcagccttatgaaatgtgtcaacaacaattttct 44561470  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 17139451 - 17139499
Alignment:
Q  91 taggcagtgactccttttctttgcggaaaggaaaaatatttaaaatatt 139  Q
    |||||||| |||  |||||||||| ||| ||||||||||||||||||||    
T  17139451 taggcagttactgtttttctttgcagaatggaaaaatatttaaaatatt 17139499  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 21472587 - 21472623
Alignment:
Q  18 tttctcagccttatgatatgtgtgaacaacaattttc 54  Q
    |||||||||||||||| |||||| |||||||||||||    
T  21472587 tttctcagccttatgaaatgtgtcaacaacaattttc 21472623  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 34154505 - 34154541
Alignment:
Q  18 tttctcagccttatgatatgtgtgaacaacaattttc 54  Q
    |||||||||||||||| |||||| |||||||||||||    
T  34154505 tttctcagccttatgaaatgtgtcaacaacaattttc 34154541  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 48256669 - 48256701
Alignment:
Q  21 ctcagccttatgatatgtgtgaacaacaatttt 53  Q
    ||||||||||||| |||||||||||||||||||    
T  48256669 ctcagccttatgaaatgtgtgaacaacaatttt 48256701  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 4866403 - 4866368
Alignment:
Q  20 tctcagccttatgatatgtgtgaacaacaattttct 55  Q
    ||||||||||||||||||||||||||||||||||||    
T  4866403 tctcagccttatgatatgtgtgaacaacaattttct 4866368  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 9582519 - 9582490
Alignment:
Q  17 atttctcagccttatgatatgtgtgaacaa 46  Q
    ||||||||||||||||||||||||||||||    
T  9582519 atttctcagccttatgatatgtgtgaacaa 9582490  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 19187328 - 19187361
Alignment:
Q  20 tctcagccttatgatatgtgtgaacaacaatttt 53  Q
    ||||||||||||||||||| ||||||||||||||    
T  19187328 tctcagccttatgatatgtctgaacaacaatttt 19187361  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 3206779 - 3206747
Alignment:
Q  22 tcagccttatgatatgtgtgaacaacaattttc 54  Q
    |||||||||||||||||||||||| ||||||||    
T  3206779 tcagccttatgatatgtgtgaacatcaattttc 3206747  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 19186715 - 19186683
Alignment:
Q  20 tctcagccttatgatatgtgtgaacaacaattt 52  Q
    ||||||||||||||||||||| |||||||||||    
T  19186715 tctcagccttatgatatgtgtcaacaacaattt 19186683  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 19054029 - 19053992
Alignment:
Q  18 tttctcagccttatgatatgtgtgaacaacaattttct 55  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  19054029 tttctcagccttatgaaatgtgtcaacaacaattttct 19053992  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 8304747 - 8304779
Alignment:
Q  22 tcagccttatgatatgtgtgaacaacaattttc 54  Q
    |||||||||||||||||||||||||||| ||||    
T  8304747 tcagccttatgatatgtgtgaacaacaaatttc 8304779  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 34231728 - 34231760
Alignment:
Q  22 tcagccttatgatatgtgtgaacaacaattttc 54  Q
    |||||||||| ||||||||||||||||||||||    
T  34231728 tcagccttataatatgtgtgaacaacaattttc 34231760  T

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