View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7325_low_36 (Length: 260)
Name: NF7325_low_36
Description: NF7325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7325_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 23 - 250
Target Start/End: Complemental strand, 38655535 - 38655308
Alignment:
| Q |
23 |
cgtggatttttccacaataaccnnnnnnnccacgttaaagctgcagaagttgtatctttaccggctaaaataaaacttataactatatccgttacgaaat |
122 |
Q |
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| T |
38655535 |
cgtggatttttccacaataaccaaaaaaaccacgttaacgctgcagaagttgtatctttaccggctaaaataaaacttataactatatccgttacgaaat |
38655436 |
T |
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| Q |
123 |
cttcctccgaatgacctgaacttaaaaatcgtgacaacatgtcttgtgtatgaagtgaattattctcttttaattctttcnnnnnnncgcgaactatttt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
38655435 |
cttcctccgaatgacctgaacttaaaaatcgtgacaacatgtcttgtgtatgaagtgaatcattctcttttaattctttctttttttcgcgaactatttt |
38655336 |
T |
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| Q |
223 |
gttcgcgaattctcttatctctgctact |
250 |
Q |
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||||||| |||||||||| |||| |||| |
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| T |
38655335 |
gttcgcgtattctcttatttctgttact |
38655308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 38642630 - 38642470
Alignment:
| Q |
20 |
acccgtggatttttccacaataaccnnnnnnnccacgttaaagctgcagaagttgtatctttaccggctaaaataaaacttataactatatccgttacga |
119 |
Q |
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||||||||||||||||| ||||||| |||||| || ||||||||||||| |||||| ||||| || ||||||||||| || |||| ||||| | |
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| T |
38642630 |
acccgtggatttttccataataaccaaaaaaaccacgtcaacgctgcagaagttgaatcttttccggccaatataaaacttattacaatatttgttacaa |
38642531 |
T |
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| Q |
120 |
aatcttcctccgaatgacctgaacttaaaaatcgtgacaacatgtcttgtgtatgaagtga |
180 |
Q |
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|||||||||| |||||| ||||||||| || || || |||||||||| || |||||||| |
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| T |
38642530 |
aatcttcctcaaaatgacttgaacttaacaaacgcgataacatgtcttcagtttgaagtga |
38642470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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