View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7325_low_6 (Length: 709)

Name: NF7325_low_6
Description: NF7325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7325_low_6
NF7325_low_6
[»] chr5 (20 HSPs)
chr5 (231-444)||(30711547-30711763)
chr5 (492-693)||(30711758-30711972)
chr5 (13-115)||(30711324-30711426)
chr5 (478-579)||(30675600-30675702)
chr5 (16-115)||(30051852-30051951)
chr5 (16-115)||(30063643-30063742)
chr5 (16-115)||(30658856-30658958)
chr5 (331-421)||(30659450-30659547)
chr5 (427-469)||(30675186-30675228)
chr5 (531-692)||(30336894-30337068)
chr5 (612-693)||(30751208-30751289)
chr5 (427-467)||(30062167-30062207)
chr5 (427-465)||(30049582-30049620)
chr5 (531-636)||(30485019-30485138)
chr5 (496-615)||(29873818-29873941)
chr5 (427-471)||(30488148-30488192)
chr5 (427-471)||(30492333-30492377)
chr5 (645-693)||(30675784-30675832)
chr5 (494-573)||(30751347-30751425)
chr5 (427-461)||(30751598-30751632)


Alignment Details
Target: chr5 (Bit Score: 159; Significance: 3e-84; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 231 - 444
Target Start/End: Original strand, 30711547 - 30711763
Alignment:
Q  231 ggttacggataatcacatagttaactcatccataaaacaaaata---gtatttatacaattaaaacaaaatagtaa--ttctatagttcaagaaatagaa 325  Q
    ||||||||||||||| ||||||||||||||||||||||||||||   ||||| |||||||| |||  || |||| |  ||||||||||||||||||||||    
T  30711547 ggttacggataatcatatagttaactcatccataaaacaaaatactagtattcatacaatttaaa--aattagttaatttctatagttcaagaaatagaa 30711644  T
Q  326 tcttaaaaaatgacaatgttttattaaaagagagagacacatggtcatatgacctgccccatgaagaaaaacatggacctatgccttactttgacaatgt 425  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30711645 tcttaaaaaatgacaatgttttattaaaagacagagacacatggtcatatgacctgccccatgaagaaaaacatggacctatgccttactttgacaatgt 30711744  T
Q  426 tttattctgtcggccacgt 444  Q
    |||||||||||||||||||    
T  30711745 tttattctgtcggccacgt 30711763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 492 - 693
Target Start/End: Original strand, 30711758 - 30711972
Alignment:
Q  492 ccacgtgaacgtttgctcacaattattgaccaccaactttgctgactttctactttcattgcatttattttcaaaagtctccttcat-----agcactca 586  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||  | |     ||||||||    
T  30711758 ccacgtgaacgtttgctcacaattattgaccacctacttttctgactttctactttcattgcatttattttcaaaggtctccagcttggttcagcactca 30711857  T
Q  587 ttctatccaaacaaatttctc--------atcttttcaactctttaatttgttttcacnnnnnnnntggctgatgctttgcttggaattgtttttgaaaa 678  Q
    ||||||| |||| ||||||||        |||||||||||||||||||||||||||||        ||||||| |||||||||||| |||||||||||||    
T  30711858 ttctatctaaactaatttctcatcttcttatcttttcaactctttaatttgttttcacaaaaacaatggctgacgctttgcttggatttgtttttgaaaa 30711957  T
Q  679 cttgacgtctctcct 693  Q
    |||||||||||||||    
T  30711958 cttgacgtctctcct 30711972  T

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Target: chr5; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 30711324 - 30711426
Alignment:
Q  13 aatatcggattaaagcaatgagagaatatcaaatcagctcaaccatccaaaatcaactcattttgcacttgaaatacacaacatgacattacaattcaag 112  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30711324 aatatcggattaaagcaatgagagaataccaaatcagctcaaccatgcaaaatcaactcattttggacttgaaatacacaacatgacattacaattcaag 30711423  T
Q  113 aat 115  Q
    |||    
T  30711424 aat 30711426  T

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Target: chr5; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 478 - 579
Target Start/End: Original strand, 30675600 - 30675702
Alignment:
Q  478 tgaaaatgtgcgtcccacgtgaacgtttgctcacaattattgacca-ccaactttgctgactttctactttcattgcatttattttcaaaagtctccttc 576  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  30675600 tgaaaatgtgcgtcccacgtgaacgtttgctcacaattattgaccaccctactttgctgactttctactttcattgcatttattctcaaaggtctccttc 30675699  T
Q  577 ata 579  Q
    |||    
T  30675700 ata 30675702  T

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Target: chr5; HSP #5
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 30051951 - 30051852
Alignment:
Q  16 atcggattaaagcaatgagagaatatcaaatcagctcaaccatccaaaatcaactcattttgcacttgaaatacacaacatgacattacaattcaagaat 115  Q
    |||||| |||||||||||||||||| |||||||| |||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  30051951 atcggactaaagcaatgagagaataccaaatcaggtcaaccatgcaaaatcaactcattttggacttgaaatacacaagatgacattacaattcaagaat 30051852  T

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Target: chr5; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 30063742 - 30063643
Alignment:
Q  16 atcggattaaagcaatgagagaatatcaaatcagctcaaccatccaaaatcaactcattttgcacttgaaatacacaacatgacattacaattcaagaat 115  Q
    |||||| ||| |||||||||||||| ||||||||||||||||| ||||||||||| |||||| | |||||||||||||||||||||||||||||||||||    
T  30063742 atcggactaaggcaatgagagaataccaaatcagctcaaccatgcaaaatcaacttattttgaagttgaaatacacaacatgacattacaattcaagaat 30063643  T

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Target: chr5; HSP #7
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 30658856 - 30658958
Alignment:
Q  16 atcggattaaagcaatgagagaatat---caaatcagctcaaccatccaaaatcaactcattttgcacttgaaatacacaacatgacattacaattcaag 112  Q
    |||||| ||||||||||||||||||    ||||||||||||||||| ||||||||||||||||||  ||||||| |||||||||| ||||||||||||||    
T  30658856 atcggactaaagcaatgagagaataataccaaatcagctcaaccatgcaaaatcaactcattttggtcttgaaaaacacaacatggcattacaattcaag 30658955  T
Q  113 aat 115  Q
    |||    
T  30658956 aat 30658958  T

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Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 331 - 421
Target Start/End: Original strand, 30659450 - 30659547
Alignment:
Q  331 aaaaatgacaatgttttattaaaagagagagacacatggtcata------tgacctgcccc-atgaagaaaaacatggacctatgccttactttgaca 421  Q
    ||||||||||||||||| |||||||||||||| |||| ||||||      |||| |||||| ||||||||||||||||||| ||| ||||||||||||    
T  30659450 aaaaatgacaatgtttttttaaaagagagagatacatagtcatactcatatgacatgcccccatgaagaaaaacatggaccaatgtcttactttgaca 30659547  T

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Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 427 - 469
Target Start/End: Original strand, 30675186 - 30675228
Alignment:
Q  427 ttattctgtcggccacgttttaaaggttaaagtggatcaatca 469  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30675186 ttattctgtcggccacgttttaaaggttaaagtggatcaatca 30675228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 531 - 692
Target Start/End: Original strand, 30336894 - 30337068
Alignment:
Q  531 tgctgactttctactttcattgcatttattttcaaaagt-ctccttcat-----agcactcattctatccaaacaaatttctc--------atcttttca 616  Q
    |||||||||||||||||||||||||||||||||||| || ||||  | |     | ||||||||||||| |||||||||||||        |||||||||    
T  30336894 tgctgactttctactttcattgcatttattttcaaaggtcctccagcttggttcaacactcattctatctaaacaaatttctcgtcttcttatcttttca 30336993  T
Q  617 actctttaatttgttttcacnnnnnnnntggctgatgctttgcttggaattgtttttgaaaacttgacgtctctcc 692  Q
    ||||||||||||||||||||        |||| || |||||||||||| |||| |||||||| |||||| ||||||    
T  30336994 actctttaatttgttttcac-aaaaaaatggccgacgctttgcttggagttgtgtttgaaaatttgacggctctcc 30337068  T

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Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 612 - 693
Target Start/End: Complemental strand, 30751289 - 30751208
Alignment:
Q  612 tttcaactctttaatttgttttcacnnnnnnnntggctgatgctttgcttggaattgtttttgaaaacttgacgtctctcct 693  Q
    |||||||||||||||||||||||||        ||||||| |||||||||||| |||| |||||||| ||||||||||||||    
T  30751289 tttcaactctttaatttgttttcacaaaaacaatggctgacgctttgcttggagttgtgtttgaaaatttgacgtctctcct 30751208  T

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Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 427 - 467
Target Start/End: Complemental strand, 30062207 - 30062167
Alignment:
Q  427 ttattctgtcggccacgttttaaaggttaaagtggatcaat 467  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30062207 ttattctgtcggccacgttttaaaggttaaagtggatcaat 30062167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 427 - 465
Target Start/End: Complemental strand, 30049620 - 30049582
Alignment:
Q  427 ttattctgtcggccacgttttaaaggttaaagtggatca 465  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30049620 ttattctgtcggccacgttttaaaggttaaagtggatca 30049582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 531 - 636
Target Start/End: Complemental strand, 30485138 - 30485019
Alignment:
Q  531 tgctgactttctactttcattgcatttattttcaaaagt-ctccttcat-----agcactcattctatccaaacaaatttctc--------atcttttca 616  Q
    |||||||||||||||||||||||||||||||||||| || ||||  | |     | ||||||||||||| |||||||||||||        |||||||||    
T  30485138 tgctgactttctactttcattgcatttattttcaaaggtcctccagcttggttcaacactcattctatctaaacaaatttctcgtcttcttatcttttca 30485039  T
Q  617 actctttaatttgttttcac 636  Q
    ||||||||||||||||||||    
T  30485038 actctttaatttgttttcac 30485019  T

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Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 615
Target Start/End: Complemental strand, 29873941 - 29873818
Alignment:
Q  496 gtgaacgtttgctcacaattattgaccaccaactttgctgactttctactttcattgcatttattttcaaaagtctccttcatag-----cactcattct 590  Q
    ||||| ||||||||| ||||||||| ||||  ||| | ||| || || || |||||||||||||| ||||| ||||||| | |||     |||||||||     
T  29873941 gtgaatgtttgctcataattattgagcacctgctt-gttgatttgctgctctcattgcatttattctcaaaggtctcctgcttagttaagcactcattcc 29873843  T
Q  591 atccaaacaaatttctcatcttttc 615  Q
    ||| |||||||||||||||||||||    
T  29873842 atcgaaacaaatttctcatcttttc 29873818  T

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Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 471
Target Start/End: Complemental strand, 30488192 - 30488148
Alignment:
Q  427 ttattctgtcggccacgttttaaaggttaaagtggatcaatcaaa 471  Q
    ||||| |||||||||||| |||| |||||||||||||||||||||    
T  30488192 ttattttgtcggccacgtattaatggttaaagtggatcaatcaaa 30488148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 471
Target Start/End: Complemental strand, 30492377 - 30492333
Alignment:
Q  427 ttattctgtcggccacgttttaaaggttaaagtggatcaatcaaa 471  Q
    ||||| |||||||||||| |||| |||||||||||||||||||||    
T  30492377 ttattttgtcggccacgtattaatggttaaagtggatcaatcaaa 30492333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 645 - 693
Target Start/End: Original strand, 30675784 - 30675832
Alignment:
Q  645 tggctgatgctttgcttggaattgtttttgaaaacttgacgtctctcct 693  Q
    ||||||| |||||||||||| |||| |||||||| ||||||||||||||    
T  30675784 tggctgacgctttgcttggagttgtgtttgaaaatttgacgtctctcct 30675832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 494 - 573
Target Start/End: Complemental strand, 30751425 - 30751347
Alignment:
Q  494 acgtgaacgtttgctcacaattattgaccaccaactttgctgactttctactttcattgcatttattttcaaaagtctcc 573  Q
    ||||||| ||||||||||||||||||| |||| || ||||||| || |||||  |||||| |||||| ||||| ||||||    
T  30751425 acgtgaatgtttgctcacaattattgaacacctac-ttgctgagttcctactaccattgcttttattctcaaaggtctcc 30751347  T

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Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 427 - 461
Target Start/End: Complemental strand, 30751632 - 30751598
Alignment:
Q  427 ttattctgtcggccacgttttaaaggttaaagtgg 461  Q
    ||||||||||||||||||||||| |||||||||||    
T  30751632 ttattctgtcggccacgttttaatggttaaagtgg 30751598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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