View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7325_low_8 (Length: 608)
Name: NF7325_low_8
Description: NF7325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7325_low_8 |
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| [»] scaffold0899 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 21 - 592
Target Start/End: Original strand, 31228719 - 31229281
Alignment:
| Q |
21 |
cataaacactgctcatccgcaaaaaatgcagcatccagactgcattttacataactggtaggtagaggtatccaattttctgtcatgcgaacttctggct |
120 |
Q |
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| T |
31228719 |
cataaacactgctcatccgcaaaaaatgcagcatccagactgcattttacataactggtaggtagaggtatccaattttctgtcatgcgaacttctggct |
31228818 |
T |
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| Q |
121 |
ggtctgctccagctgatacacgctgcctgtgctgctgccatacatgtagaacaacactgaatcggttcacaacatggtccacagtctcatttatattatc |
220 |
Q |
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| T |
31228819 |
ggtctgctccagctgatacacgctgcctgtgctgctgccatacatgtagaacaacactggatcggttcacaacatggtccacagtctcatttatattatc |
31228918 |
T |
|
| Q |
221 |
ccacagttgcacataagtacattccttttcttccataatatactccaagatatcatggcataagtcctcggctggtccatatttaatttctgccaaatct |
320 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31228919 |
ccacagttgcacataagtatgttccttttcttccataatatactccaagatatcatggcataagtcctcggctggtccatatttaatttctgccaaatct |
31229018 |
T |
|
| Q |
321 |
gcataaaaatttctgcaaaacattctgcattgtgcataatactttccaaaggtgagtcttcctcctacattcaacacttatatcacaaactaaaaagaga |
420 |
Q |
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| T |
31229019 |
gcataaaaatttctgcaaaacattctgcattgtgcataatactttccaaaggtgagtcttcctcctacattcaacacttatatcacaaactaaaaagaga |
31229118 |
T |
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| Q |
421 |
agccattttgaccccatgtaggatttgacagactacacattcaagtgaacattccactctctgattttgcagctttgatctatttggtaagcaatccctc |
520 |
Q |
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| T |
31229119 |
tgccattttgaccccatgtaggatttgacagactacacattcaagtgaacattcca--ctctgattttgcagctttgatctatttggtaagcaatccctc |
31229216 |
T |
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| Q |
521 |
ccaagacgccacttaaaatgttttaccttcagaggaatttgcagagaccaaagtttattccaatcaccttca |
592 |
Q |
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| T |
31229217 |
ccaagacgccacttaaaatgttt-------agaggaatttgcagagaccaaagtttattccaatcaccttca |
31229281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0899 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0899
Description:
Target: scaffold0899; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 488 - 590
Target Start/End: Original strand, 1380 - 1480
Alignment:
| Q |
488 |
tgcagctttgatctatttggtaagcaatccctcccaagacgccacttaaaatgttttaccttcagaggaatttgcagagaccaaagtttattccaatcac |
587 |
Q |
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|||||| |||||||| || |||| ||||| ||||||||| |||| |||||||||||||||| || ||| || | ||||| |||||||||| |||||| |
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| T |
1380 |
tgcagccttgatctacttagtaaacaatctctcccaagaagccaaataaaatgttttacctttggaagaa--tgtatagaccgaagtttattcaaatcac |
1477 |
T |
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| Q |
588 |
ctt |
590 |
Q |
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||| |
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| T |
1478 |
ctt |
1480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 558
Target Start/End: Complemental strand, 41157417 - 41157358
Alignment:
| Q |
499 |
tctatttggtaagcaatccctcccaagacgccacttaaaatgttttaccttcagaggaat |
558 |
Q |
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| T |
41157417 |
tctatttggtaggcaatccctccgaagacgccacataaaatgctatacctttggaggaat |
41157358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 515 - 591
Target Start/End: Complemental strand, 24423793 - 24423717
Alignment:
| Q |
515 |
tccctcccaagacgccacttaaaatgttttaccttcagaggaatttgcagagaccaaagtttattccaatcaccttc |
591 |
Q |
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||||| ||||| |||||| ||||||| || |||||| ||||||| | |||||||| | ||||||||||||||||| |
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| T |
24423793 |
tcccttccaaggcgccacataaaatgcttaaccttcggaggaatcggtagagaccacaacttattccaatcaccttc |
24423717 |
T |
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