View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7326_high_2 (Length: 491)
Name: NF7326_high_2
Description: NF7326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7326_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 27034679 - 27035065
Alignment:
| Q |
1 |
cacaggcattggcatcgaacacgacactgacacacgtcagacactagatacatcttctactatagagaaaatttatctttttgtaattgtcaatctttca |
100 |
Q |
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| T |
27034679 |
cacaggcattggcatcgaacacgac--tgacacacgtcagacaccagatacatcttctactatagagaaaatttatctttttgtaattgtcaatctttca |
27034776 |
T |
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| Q |
101 |
tatcttgtgtcataagtaatagtagtattttgaattaagaggttaggttcaaatgattaatgagttccaacgaaagtcaaatcgatcagagtacccaagt |
200 |
Q |
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| T |
27034777 |
tatcttgtgtcataagtaatagtagtattctgaattaagaggttaggttcaaatgattaatgagttccaacgaaagtcaaatcgatcagagtacccgagt |
27034876 |
T |
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| Q |
201 |
tcaagctttggttggaacaataagttgtcatactttattcacctctttgccaaactcgggatttataggaagtcaggaaccatttcctcttgaaattgga |
300 |
Q |
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| T |
27034877 |
tcaagctttggttggaacaataagttgtcgtactttattcacctctttgccgaactcaggatttataggaagtcaggaaccatttcctcttgaaattgga |
27034976 |
T |
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| Q |
301 |
aggttaagacaaagaaaagtgactttctttggatacggcttgtgaattttcttcttgagttaagtgctgatttagcaatttattccttt |
389 |
Q |
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| T |
27034977 |
gggttaagacaaagaaaagtgaccttctttggatacggcttgtgaattttcttcttgagttaagtactgttttagcaatttattccttt |
27035065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 480
Target Start/End: Original strand, 27036754 - 27036787
Alignment:
| Q |
447 |
agagtagtaaagattccaacttatttatctgatg |
480 |
Q |
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| T |
27036754 |
agagtagtaaagtttccaacttatttatctgatg |
27036787 |
T |
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