View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7326_low_10 (Length: 300)
Name: NF7326_low_10
Description: NF7326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7326_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 23 - 282
Target Start/End: Original strand, 3016560 - 3016818
Alignment:
| Q |
23 |
aggtctcaagagtcaaaacaatggttgaccaaaatattaatcacatgtgcttgatattgcannnnnnnncttggaactgcagcaagttggaaagagctta |
122 |
Q |
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| T |
3016560 |
aggtctcaagagtcaaaacaatggttgaccaaaatattaatcacatgtgcttgatattgcattttttt-cttggaactgcagcaagttggaaagagctta |
3016658 |
T |
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| Q |
123 |
tcaaaggttgaacaatcaccttctaagtccattcaaaaagcactctctccatcattgaaagcattgatttctgataaacttataaagcattcagatgttg |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3016659 |
tcaaaggttgaacaatcaccttctaagtccattcaaaaagcactctctccatcattgaaagcattgatttctgataaacttataaagcattcagatgttg |
3016758 |
T |
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| Q |
223 |
gtgtcaaagttgcccttgcctcctgcttgagtgagttaacaagaatcactgcacctgatg |
282 |
Q |
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| T |
3016759 |
gtgtcaaagttgcccttgcctcctgcttgagtgagttaacaagaatcactgcacctgatg |
3016818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 92 - 282
Target Start/End: Original strand, 3032368 - 3032558
Alignment:
| Q |
92 |
cttggaactgcagcaagttggaaagagcttatcaaaggttgaacaatcaccttctaagtccattcaaaaagcactctctccatcattgaaagcattgatt |
191 |
Q |
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|||||||||||||||| ||| || || |||||| |||||||||||||||| || | || || | ||| ||||| |||||||||||||||||||| ||| |
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| T |
3032368 |
cttggaactgcagcaaattgaaagctgcctatcaagggttgaacaatcacctcctgaatctatgctaaatgcactgtctccatcattgaaagcattaatt |
3032467 |
T |
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| Q |
192 |
tctgataaacttataaagcattcagatgttggtgtcaaagttgcccttgcctcctgcttgagtgagttaacaagaatcactgcacctgatg |
282 |
Q |
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||||||||||||||||||||||||||| || ||||||||| || |||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
3032468 |
gctgataaacttataaagcattcagatgctgatgtcaaagtggctcttgcctcctgcttcagtgagataacaagaatcactgcacctgatg |
3032558 |
T |
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