View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7326_low_11 (Length: 274)

Name: NF7326_low_11
Description: NF7326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7326_low_11
NF7326_low_11
[»] chr6 (9 HSPs)
chr6 (48-259)||(27726047-27726274)
chr6 (48-257)||(27533093-27533322)
chr6 (48-252)||(27707117-27707341)
chr6 (48-257)||(27692356-27692586)
chr6 (101-259)||(27594522-27594696)
chr6 (89-259)||(27614029-27614218)
chr6 (152-194)||(26801234-26801276)
chr6 (20-50)||(34255489-34255519)
chr6 (20-50)||(34255621-34255651)
[»] scaffold0349 (1 HSPs)
scaffold0349 (48-259)||(4625-4853)
[»] chr8 (3 HSPs)
chr8 (20-50)||(5557817-5557847)
chr8 (20-48)||(5557885-5557913)
chr8 (20-48)||(5557951-5557979)
[»] chr7 (4 HSPs)
chr7 (20-50)||(4341276-4341306)
chr7 (20-50)||(48477942-48477972)
chr7 (20-50)||(48478270-48478300)
chr7 (20-48)||(42785934-42785962)
[»] chr4 (1 HSPs)
chr4 (20-50)||(5599911-5599941)
[»] chr3 (1 HSPs)
chr3 (20-50)||(14521068-14521098)
[»] chr2 (3 HSPs)
chr2 (20-50)||(2743347-2743377)
chr2 (20-50)||(2743413-2743443)
chr2 (20-50)||(2743479-2743509)
[»] chr5 (3 HSPs)
chr5 (20-48)||(41528506-41528534)
chr5 (20-48)||(41528572-41528600)
chr5 (20-48)||(41528638-41528666)


Alignment Details
Target: chr6 (Bit Score: 151; Significance: 6e-80; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 48 - 259
Target Start/End: Complemental strand, 27726274 - 27726047
Alignment:
Q  48 cgatcacaaagggccgagattaacaactgcatgaaagttgaaactatggacttttattaatgcacggaatccgggtcctgttgatactactactgttgga 147  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27726274 cgataacaaagggccgagattaacaactgcatgaaagttgaaactatggacttttattaatgcacggaatccaggtcctgttgatactactactgttgga 27726175  T
Q  148 agca----------------gagactcaattaacatgtcatttgatgatatttgaaatgcaaattttcctcgtttttctttgtttagaagtaaccaaaat 231  Q
    ||||                 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  27726174 agcaaagtattagcaaatgtaagactcaattaacatgtcatttgatgatatttgaaatgcaaattttccttgtttttctttggttagaagtaaccaaaat 27726075  T
Q  232 gtatcttgatggtgtaatggagcttcat 259  Q
    | ||||||||||||||||||||||||||    
T  27726074 gcatcttgatggtgtaatggagcttcat 27726047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 48 - 257
Target Start/End: Complemental strand, 27533322 - 27533093
Alignment:
Q  48 cgatcacaaagggccgagattaacaactgcatgaaagttgaaactatggacttttattaatgcacggaatccgggtcctgttgatactactactgttgga 147  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27533322 cgataacaaagggccgagattaacaactgcatgaaagttgaaactatggacttttattaatgcacggaatccgggtcccgttgatactactactgttgga 27533223  T
Q  148 agca-----------------gagactcaattaacatgtcatttgatgatatttgaaatgcaaattttcc---tcgtttttctttgtttagaagtaacca 227  Q
    ||||                 |||||||||||||||||||  ||||||||||||||||||||||||||||   | ||||||||||| |||||||||||||    
T  27533222 agcacaagttaaatcaaatgtgagactcaattaacatgtctattgatgatatttgaaatgcaaattttccattttgtttttctttggttagaagtaacca 27533123  T
Q  228 aaatgtatcttgatggtgtaatggagcttc 257  Q
    ||||||||| ||||||||||||||||||||    
T  27533122 aaatgtatcctgatggtgtaatggagcttc 27533093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 48 - 252
Target Start/End: Complemental strand, 27707341 - 27707117
Alignment:
Q  48 cgatcacaaagggccgagattaacaactgcatgaaagttgaaactatggacttttattaatgcacggaatccgggtcctgttgatactactactgttgga 147  Q
    |||||||||||||  ||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27707341 cgatcacaaagggtggagtttaacgattgcatgaaagttgaaactatggacttttattaatgcacggaatccgggtcctgttgatactactactgttgga 27707242  T
Q  148 agca-----------------gagactcaattaacatgtcatttgatgatatttgaaatgcaaattttcc---tcgtttttctttgtttagaagtaacca 227  Q
    ||||                 |||||||||||||||||||||||||||||||||||||||||||||||||   | ||||||||||| |||||||||||||    
T  27707241 agcacaagttaaatcaaatgtgagactcaattaacatgtcatttgatgatatttgaaatgcaaattttcctttttgtttttctttggttagaagtaacca 27707142  T
Q  228 aaatgtatcttgatggtgtaatgga 252  Q
    ||||||||| |||||||||||||||    
T  27707141 aaatgtatcctgatggtgtaatgga 27707117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 48 - 257
Target Start/End: Complemental strand, 27692586 - 27692356
Alignment:
Q  48 cgatcacaaagggccgagattaacaactgcatgaaagttgaaactatggacttttattaatgcacggaatccgggtcctgttgatactactactgttgga 147  Q
    |||||||||||||  ||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27692586 cgatcacaaagggtggagtttaacgattgcatgaaagttgaaactatggacttttattaatgcacggaatccgggtcctgttgatactactactgttgga 27692487  T
Q  148 agca-----------------gagactcaattaacatgtcatttgatgatatttgaaatgc-aaattttcc---tcgtttttctttgtttagaagtaacc 226  Q
    ||||                 |||||||||||||||||||||||||||||||||||||||| |||||||||   | ||||||||||| ||||||||||||    
T  27692486 agcacaagttaaatcaaatgtgagactcaattaacatgtcatttgatgatatttgaaatgcaaaattttcctttttgtttttctttggttagaagtaacc 27692387  T
Q  227 aaaatgtatcttgatggtgtaatggagcttc 257  Q
    |||||||||| | ||||||||||||||||||    
T  27692386 aaaatgtatcctcatggtgtaatggagcttc 27692356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 101 - 259
Target Start/End: Complemental strand, 27594696 - 27594522
Alignment:
Q  101 ttattaatgcacggaatccgggtcctgttgatactactactgttggaagca----------------gagactcaattaacatgtcatttgatgatattt 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||    
T  27594696 ttattaatgcacggaatccgggtcctgttgatactactactgttggaagcaaagttaaagcaaatgtgagactcaattaacatgtcatttgatgatattt 27594597  T
Q  185 gaaatgcaaattttcctcgtttttctttgtttagaagtaaccaaaatgtatcttgatggtgtaatggagcttcat 259  Q
    |||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27594596 gaaatgcaaattttccttatttttctttggttagaagtaaccaaaatgtatcttgatggtgtaatggagcttcat 27594522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 89 - 259
Target Start/End: Complemental strand, 27614218 - 27614029
Alignment:
Q  89 aactatggacttttattaatgcacggaatccgggtcctgttgatactactactgttggaagca-----------------gagactcaattaacatgtca 171  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||                 ||||||||||||||||||||    
T  27614218 aactatggacttttattaatgcacggaatccgggtcctgcggatactactagtgttggaagcacaagttaaagcaaatgtgagactcaattaacatgtca 27614119  T
Q  172 tttgatgatatttgaaatgcaaattttcctc--gtttttctttgtttagaagtaaccaaaatgtatcttgatggtgtaatggagcttcat 259  Q
    ||||||||||||||||||| |||||| |||   ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  27614118 tttgatgatatttgaaatgtaaatttgccttttgtttttctttggttagaagtaaccaaaatgtatcttgatggtgtaatgaagcttcat 27614029  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 26801234 - 26801276
Alignment:
Q  152 gagactcaattaacatgtcatttgatgatatttgaaatgcaaa 194  Q
    |||| |||| ||| |||||||||||||||||||||||||||||    
T  26801234 gagattcaaataatatgtcatttgatgatatttgaaatgcaaa 26801276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 50
Target Start/End: Original strand, 34255489 - 34255519
Alignment:
Q  20 gtagcctatgaggaacggctcatagtaacga 50  Q
    |||||||||||||||||||||||||||||||    
T  34255489 gtagcctatgaggaacggctcatagtaacga 34255519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 50
Target Start/End: Original strand, 34255621 - 34255651
Alignment:
Q  20 gtagcctatgaggaacggctcatagtaacga 50  Q
    |||||||||||||||||||||||||||||||    
T  34255621 gtagcctatgaggaacggctcatagtaacga 34255651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 48 - 259
Target Start/End: Complemental strand, 4853 - 4625
Alignment:
Q  48 cgatcacaaagggccgagattaacaactgcatgaaagttgaaactatggacttttattaatgcacggaatccgggtcctgttgatactactactgttgga 147  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4853 cgataacaaagggccgagattaacaactgcatgaaagttgaaactatggacttttattaatgcacggaatccaggtcctgttgatactactactgttgga 4754  T
Q  148 agca----------------gagactcaattaacatgtcatttgatgatatttgaaatgcaaattttcc-tcgtttttctttgtttagaagtaaccaaaa 230  Q
    ||||                 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||    
T  4753 agcaaagtattagcaaatgtaagactcaattaacatgtcatttgatgatatttgaaatgcaaattttcctttgtttttctttggttagaagtaaccaaaa 4654  T
Q  231 tgtatcttgatggtgtaatggagcttcat 259  Q
    || ||||||||||||||||||||||||||    
T  4653 tgcatcttgatggtgtaatggagcttcat 4625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 50
Target Start/End: Complemental strand, 5557847 - 5557817
Alignment:
Q  20 gtagcctatgaggaacggctcatagtaacga 50  Q
    |||||||||||||||||||||||||||||||    
T  5557847 gtagcctatgaggaacggctcatagtaacga 5557817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 5557913 - 5557885
Alignment:
Q  20 gtagcctatgaggaacggctcatagtaac 48  Q
    |||||||||||||||||||||||||||||    
T  5557913 gtagcctatgaggaacggctcatagtaac 5557885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 5557979 - 5557951
Alignment:
Q  20 gtagcctatgaggaacggctcatagtaac 48  Q
    |||||||||||||||||||||||||||||    
T  5557979 gtagcctatgaggaacggctcatagtaac 5557951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 50
Target Start/End: Complemental strand, 4341306 - 4341276
Alignment:
Q  20 gtagcctatgaggaacggctcatagtaacga 50  Q
    |||||||||||||||||||||||||||||||    
T  4341306 gtagcctatgaggaacggctcatagtaacga 4341276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 50
Target Start/End: Complemental strand, 48477972 - 48477942
Alignment:
Q  20 gtagcctatgaggaacggctcatagtaacga 50  Q
    |||||||||||||||||||||||||||||||    
T  48477972 gtagcctatgaggaacggctcatagtaacga 48477942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 50
Target Start/End: Complemental strand, 48478300 - 48478270
Alignment:
Q  20 gtagcctatgaggaacggctcatagtaacga 50  Q
    |||||||||||||||||||||||||||||||    
T  48478300 gtagcctatgaggaacggctcatagtaacga 48478270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 42785934 - 42785962
Alignment:
Q  20 gtagcctatgaggaacggctcatagtaac 48  Q
    |||||||||||||||||||||||||||||    
T  42785934 gtagcctatgaggaacggctcatagtaac 42785962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 50
Target Start/End: Complemental strand, 5599941 - 5599911
Alignment:
Q  20 gtagcctatgaggaacggctcatagtaacga 50  Q
    |||||||||||||||||||||||||||||||    
T  5599941 gtagcctatgaggaacggctcatagtaacga 5599911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 50
Target Start/End: Original strand, 14521068 - 14521098
Alignment:
Q  20 gtagcctatgaggaacggctcatagtaacga 50  Q
    |||||||||||||||||||||||||||||||    
T  14521068 gtagcctatgaggaacggctcatagtaacga 14521098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 50
Target Start/End: Original strand, 2743347 - 2743377
Alignment:
Q  20 gtagcctatgaggaacggctcatagtaacga 50  Q
    |||||||||||||||||||||||||||||||    
T  2743347 gtagcctatgaggaacggctcatagtaacga 2743377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 50
Target Start/End: Original strand, 2743413 - 2743443
Alignment:
Q  20 gtagcctatgaggaacggctcatagtaacga 50  Q
    |||||||||||||||||||||||||||||||    
T  2743413 gtagcctatgaggaacggctcatagtaacga 2743443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 50
Target Start/End: Original strand, 2743479 - 2743509
Alignment:
Q  20 gtagcctatgaggaacggctcatagtaacga 50  Q
    |||||||||||||||||||||||||||||||    
T  2743479 gtagcctatgaggaacggctcatagtaacga 2743509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 41528534 - 41528506
Alignment:
Q  20 gtagcctatgaggaacggctcatagtaac 48  Q
    |||||||||||||||||||||||||||||    
T  41528534 gtagcctatgaggaacggctcatagtaac 41528506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 41528600 - 41528572
Alignment:
Q  20 gtagcctatgaggaacggctcatagtaac 48  Q
    |||||||||||||||||||||||||||||    
T  41528600 gtagcctatgaggaacggctcatagtaac 41528572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 41528666 - 41528638
Alignment:
Q  20 gtagcctatgaggaacggctcatagtaac 48  Q
    |||||||||||||||||||||||||||||    
T  41528666 gtagcctatgaggaacggctcatagtaac 41528638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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