View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7326_low_14 (Length: 262)
Name: NF7326_low_14
Description: NF7326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7326_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 175 - 257
Target Start/End: Original strand, 40172833 - 40172915
Alignment:
| Q |
175 |
agaaatttaaaaggccatctatggactacatggagaagatacagaaaaacatcaatgctagcatgcgggcaatgcttattgat |
257 |
Q |
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| T |
40172833 |
agaaatttaaaaggccatctatggactacatggagaagatacagaaaaagatcaatgctagcatgcgggcaatgcttattgat |
40172915 |
T |
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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 40172624 - 40172699
Alignment:
| Q |
10 |
atgagatatagcttttcaaatttccaaactcaggtttttctatcatatcgtttatgcagttatgcctgtggtttag |
85 |
Q |
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| T |
40172624 |
atgagatatagcttttcaaacttccaaactcaggtttttctatcatatcatttatgcagttatgcctgtggtttag |
40172699 |
T |
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