View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7326_low_16 (Length: 257)
Name: NF7326_low_16
Description: NF7326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7326_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 434593 - 434839
Alignment:
| Q |
1 |
atcttcaattaatttgaatcccttgtattcaatgagtcgaagtcaattgagactcaatgacaaaggtataactaactgcataatttatgaatttggatcc |
100 |
Q |
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| T |
434593 |
atcttcaattaatttgaatcccttgtattcaatgagtcgaagtcaattgagactcaatgacaaaggtataactaactgcataatttatgaatttggatcc |
434692 |
T |
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| Q |
101 |
ataatcttagatgaatcgaatttaattctaacaaaaacactaattaactgaagcaaacgcgaaaaactacctttgtaaatctgggcgacatccatgaaat |
200 |
Q |
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| T |
434693 |
ataatcttagatgaatcgaatttaattctcacaaaaacactaattaactgaagcaaacgcgaaaaactacctttgaaaatctgggcgacatccatgaaat |
434792 |
T |
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| Q |
201 |
tggaagacaacgaaaa-ccctaatcttaaaatgagatccatgatgtcc |
247 |
Q |
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| T |
434793 |
tggaagacgacgaaaatccctaatctt-aaatgagatccatgatgtcc |
434839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 17512754 - 17512681
Alignment:
| Q |
133 |
aaaaacactaattaactgaagcaaacgcgaaaaactacctttgtaaatctgggcgacatccatgaaattggaag |
206 |
Q |
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| T |
17512754 |
aaaaacaataactaactgaaacaaacgcgaaaaactacatttgaaaatctaggcgacatccatgaaattggaag |
17512681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 17512893 - 17512780
Alignment:
| Q |
14 |
ttgaatcccttgtattcaatgagtcgaagtcaattgagactcaatgacaaaggtataactaactgcataatttatgaatttggatccataatcttagatg |
113 |
Q |
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| T |
17512893 |
ttgaatcccttggcttcaataagttaaaatcaattgagactcaatgacaaaggtacaactaatcgtagaatttatgaatttgaagccctaatcttaaatg |
17512794 |
T |
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| Q |
114 |
aatcgaatttaatt |
127 |
Q |
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| T |
17512793 |
aattgaattcaatt |
17512780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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