View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7326_low_17 (Length: 245)
Name: NF7326_low_17
Description: NF7326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7326_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 37785915 - 37785719
Alignment:
| Q |
1 |
tattttcaagatgttggtggagaggattagacctcatttaaatagtcttatcaagtagttttattcctaaacgaggtatcactaataatgctattatcgc |
100 |
Q |
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| T |
37785915 |
tattttcaaggtgttggtggggaggattagacctcatttaaatagtctta----gtagttttattcctaaacgaggtatcactaataatgctattatcgc |
37785820 |
T |
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| Q |
101 |
acataaaatagttcatagcatgaataagaagaaaggggaaaaaggttatcttatgttcaaaattgattttgtaaaagcatatgatagagtagattggaat |
200 |
Q |
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| T |
37785819 |
acataaaatagttcatagcatgaataagaagaaaggggaaaaaggttatcttatgttcaaaattgattttgtaaaagcatatgacatagtagattggaat |
37785720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 54873121 - 54873318
Alignment:
| Q |
15 |
tggtggagaggattagacctcatttaaatagtcttatca-----------agtagttttattcctaaacgaggtatcactaataatgctattatcgcaca |
103 |
Q |
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| T |
54873121 |
tggtggggaggattagacctcatttaaatagccttatcagcccttttcaaagtagttttattcctaaacgaagcacgactgataatgttattatcgtaca |
54873220 |
T |
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| Q |
104 |
taaaatagttcatagcatgaataagaagaaaggggaaaaaggttatcttatgttcaaaattgattttgtaaaagcatatgatagagtagattggaatt |
201 |
Q |
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| T |
54873221 |
tgaaatagttcataacatgaataagaagaaagggaaaaaaggttatcttttgttcaaaattgattttgaaaaagcttatgatagagtagattggaatt |
54873318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 85 - 201
Target Start/End: Complemental strand, 55430380 - 55430264
Alignment:
| Q |
85 |
ataatgctattatcgcacataaaatagttcatagcatgaataagaagaaaggggaaaaaggttatcttatgttcaaaattgattttgtaaaagcatatga |
184 |
Q |
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| T |
55430380 |
ataatgctattatcgcagaggaaatagttcatagcatgaataagaagaaagggaaaaaaggttaacttttgttcaaaattgattttgaaaaagcttatga |
55430281 |
T |
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| Q |
185 |
tagagtagattggaatt |
201 |
Q |
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| T |
55430280 |
tagagtagattggaatt |
55430264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 178
Target Start/End: Original strand, 7020271 - 7020443
Alignment:
| Q |
17 |
gtggagaggattagacctcatttaaatagtcttatca-----------agtagttttattcctaaacgaggtatcactaataatgctattatcgcacata |
105 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||| |||||| |||||||||||| |
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| T |
7020271 |
gtggggaggattagacctcatttaaatagtcttatcagcccttttcaaagtagttttattcctaaacgaggcacgactgataatgttattatcgcacacg |
7020370 |
T |
|
| Q |
106 |
aaatagttcatagcatgaataagaagaaaggggaaaaaggttatcttatgttcaaaattgattttgtaaaagc |
178 |
Q |
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|||||||||||||||| ||||| ||||||||| |||||||||||||| ||||||||||||| |||| |||||| |
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| T |
7020371 |
aaatagttcatagcataaataaaaagaaagggaaaaaaggttatcttttgttcaaaattgactttgaaaaagc |
7020443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 85 - 201
Target Start/End: Complemental strand, 15919513 - 15919397
Alignment:
| Q |
85 |
ataatgctattatcgcacataaaatagttcatagcatgaataagaagaaaggggaaaaaggttatcttatgttcaaaattgattttgtaaaagcatatga |
184 |
Q |
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|||||| |||||||||| | |||||||||||||||||||||||||||||||| |||| |||||| || |||||||||||||||||| |||||| ||||| |
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| T |
15919513 |
ataatgttattatcgcataggaaatagttcatagcatgaataagaagaaagggaaaaacggttatattttgttcaaaattgattttgaaaaagcttatga |
15919414 |
T |
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| Q |
185 |
tagagtagattggaatt |
201 |
Q |
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| T |
15919413 |
tagagtagattggaatt |
15919397 |
T |
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