View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7326_low_19 (Length: 239)
Name: NF7326_low_19
Description: NF7326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7326_low_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 45279911 - 45280173
Alignment:
| Q |
1 |
aaatatgttataaaaatagcaagtacctttgagcttgttgatgaaaagtttcgccttgtcttcaacactatttgagagagactgaaattgaaaatagata |
100 |
Q |
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| T |
45279911 |
aaatatgttataaaaatagcaagtacctttgagcttgttgatgaaaagtttcgccttgtcttcaacactatttgagagagactgaaattgaaaatagata |
45280010 |
T |
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| Q |
101 |
tataagtattcttgtacataaatttatgtttgcaac--------------------aaaacaaaggttaat----taacagtaagagtaaaagttcatac |
176 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
45280011 |
tataagtattcttgtacataaatttatgtttgcaacaaaacaattcgcattaacataaaacaaaggttaattaattaacagtaagagtaaaagttcatac |
45280110 |
T |
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| Q |
177 |
tgatcattttggtttatttttcataatgatcattttatatacttccaaggtatataggacata |
239 |
Q |
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| T |
45280111 |
tgatcattttggtttatttttcataatgatcattttatatacttccaaggtatataggacata |
45280173 |
T |
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