View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7326_low_2 (Length: 655)
Name: NF7326_low_2
Description: NF7326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7326_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 565; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 1 - 637
Target Start/End: Original strand, 3489602 - 3490239
Alignment:
| Q |
1 |
cattatttccatttattgataattaagccaatttttaaattagagatcataaaataaaaaattttgttttacaacttatatgaagagtgcttaataaatt |
100 |
Q |
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| T |
3489602 |
cattatttccatttattgataattaagccaatttttaaattagagatcataaaatcaaaaattttgttttacaacttatatgaagagtgtttaataaatt |
3489701 |
T |
|
| Q |
101 |
ttcatttcatatcaccttataacaatttagatattaaataattactctcttt-aggttttcttgtgctgaaattttgaataggccttggtattgcatttt |
199 |
Q |
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| T |
3489702 |
ttcatttcatatcaccttataacaatttagatattaaataattactctcttttaggttttcttgtgctgaaattttgaataggccttggtattgcatttt |
3489801 |
T |
|
| Q |
200 |
tctgttattaaccattttctgttatcaaatggcagtggaatgtgttgatgtaccagtgatttctggactaactatgtcgacacatgttggtgtattaaga |
299 |
Q |
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| T |
3489802 |
tctgttattaaccattttctgttatcaaatggcagagaaatgtgttgatgtaccagtgatttctggactaactatgtcgacacgtgttggtgtattaaga |
3489901 |
T |
|
| Q |
300 |
agaagacacacttctggaaaaactagtcctggaaataatgaagaaaaacttgttcctcattatcttcgagattcgacaggttcctgtcatgatttttgca |
399 |
Q |
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| T |
3489902 |
agaagacacacttctggaaaaactagtcctggaaataatgaagaaaaacttgttcctcattatcttcgagattcgacaggttcctgtcatgatttttgca |
3490001 |
T |
|
| Q |
400 |
aatatgggatgaagcttgcacttgaagaaaagnnnnnnngtttaataccaaggatagccgaaagaacacaactttacagaagtacactacagaaccttgc |
499 |
Q |
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| T |
3490002 |
aatatgggatgaagcttgcacttgaagaaaagaaaaaaagtttaataccaaggatagccgaaagaacacaacttcacagaagtacactacagaaccttgc |
3490101 |
T |
|
| Q |
500 |
tgaagtcgtaacatcaggtgtcaaacttcgcgcatcaatgaattctgaacgaaccaagatgtcgttggtcaaacacaggaaatcaactgattctgaggtc |
599 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3490102 |
tgaaatcgtaacatcaggtgtcaaacttcgtgcatcaatgaattccaaaccaaccaagatgtcgttggtcaaacacaggaaatcaactgattctgaggtc |
3490201 |
T |
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| Q |
600 |
cggatttctaatgtctcagacacgaccaaggtcgttaa |
637 |
Q |
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| T |
3490202 |
cggatttctaatgtctcagacacgaccaaggtcgttaa |
3490239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 3509568 - 3509623
Alignment:
| Q |
81 |
tgaagagtgcttaataaattttcatttcatatcaccttataacaatttagatattaa |
137 |
Q |
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| T |
3509568 |
tgaagagtagttgataaattttcatttcatatcaccttataa-aatgtagatattaa |
3509623 |
T |
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