View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7326_low_20 (Length: 228)

Name: NF7326_low_20
Description: NF7326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7326_low_20
NF7326_low_20
[»] chr3 (4 HSPs)
chr3 (4-218)||(19820580-19820794)
chr3 (4-51)||(11414368-11414415)
chr3 (4-46)||(50203909-50203952)
chr3 (4-51)||(49477538-49477586)
[»] chr8 (3 HSPs)
chr8 (148-200)||(12674578-12674630)
chr8 (4-51)||(35561670-35561718)
chr8 (4-46)||(9596271-9596314)
[»] chr7 (2 HSPs)
chr7 (4-51)||(6782830-6782878)
chr7 (4-51)||(6783042-6783090)
[»] chr5 (6 HSPs)
chr5 (4-51)||(3762910-3762958)
chr5 (4-46)||(14769884-14769927)
chr5 (4-42)||(30870937-30870976)
chr5 (4-51)||(35527040-35527088)
chr5 (4-51)||(38376735-38376783)
chr5 (4-51)||(43490308-43490356)
[»] chr2 (8 HSPs)
chr2 (4-51)||(29695391-29695439)
chr2 (4-50)||(27545168-27545215)
chr2 (5-46)||(28193388-28193430)
chr2 (4-51)||(883653-883701)
chr2 (4-51)||(12419842-12419890)
chr2 (4-51)||(12431902-12431950)
chr2 (4-51)||(17727408-17727456)
chr2 (4-51)||(25621337-25621385)
[»] chr6 (3 HSPs)
chr6 (4-46)||(5269325-5269368)
chr6 (4-48)||(24558795-24558840)
chr6 (4-43)||(8427562-8427602)
[»] chr4 (7 HSPs)
chr4 (4-46)||(49380932-49380975)
chr4 (4-42)||(49544345-49544384)
chr4 (4-41)||(52810677-52810715)
chr4 (4-51)||(1923043-1923091)
chr4 (4-51)||(5488371-5488419)
chr4 (4-51)||(29113453-29113501)
chr4 (4-51)||(43943677-43943725)
[»] chr1 (3 HSPs)
chr1 (4-46)||(13959411-13959454)
chr1 (4-42)||(40521545-40521584)
chr1 (4-51)||(39649136-39649184)
[»] scaffold0029 (1 HSPs)
scaffold0029 (4-51)||(76856-76904)


Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 4 - 218
Target Start/End: Original strand, 19820580 - 19820794
Alignment:
Q  4 ctttataaactcttctcaagaatcttattatccgatgtgagacatgggnnnnnnnccaatactatttggatggtgtgaaaggaacataatgtaagcannn 103  Q
    ||||||||||||||||||||| | |||||||||||||||  |||||||       ||||||||||||||||||||||||||||||||||||||||||       
T  19820580 ctttataaactcttctcaagagttttattatccgatgtggaacatgggttttttcccaatactatttggatggtgtgaaaggaacataatgtaagcattt 19820679  T
Q  104 nnnnnggtaataaagagttacctttggaccaggtgccgaaacgcattaaacttcatttttgatggtggttgaaattacataaccttcattatttttgagt 203  Q
          |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  19820680 tcttttgtaataaagagttacctttggaccaggtgctgaaacgcattaaacttcatttttgatggtggttgaaattacataaccttcattatttttgcgt 19820779  T
Q  204 ctttcatgtgtgatg 218  Q
    |||||||||||||||    
T  19820780 ctttcatgtgtgatg 19820794  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 11414415 - 11414368
Alignment:
Q  4 ctttataaactcttctcaagaatcttattatccgatgtgagacatggg 51  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  11414415 ctttataaactcttctcaagagtcttattatccgatgtgggacatggg 11414368  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 50203909 - 50203952
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgtgagac 46  Q
    ||||||||||||||||||||| |||||| |||||||||||||||    
T  50203909 ctttataaactcttctcaagagtcttatctatccgatgtgagac 50203952  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 49477586 - 49477538
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgtgagacatggg 51  Q
    ||||||||||||||||||||| |||||| ||||||||||| ||| ||||    
T  49477586 ctttataaactcttctcaagagtcttatctatccgatgtgggacttggg 49477538  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 12674630 - 12674578
Alignment:
Q  148 attaaacttcatttttgatggtggttgaaattacataaccttcattatttttg 200  Q
    ||||||||||||||||||||||||| |||||| ||||||  ||||||||||||    
T  12674630 attaaacttcatttttgatggtggtcgaaattgcataactctcattatttttg 12674578  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 35561718 - 35561670
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgtgagacatggg 51  Q
    |||||||||||||||||||||||||||| ||||||||||| ||| ||||    
T  35561718 ctttataaactcttctcaagaatcttatctatccgatgtgggacttggg 35561670  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 9596271 - 9596314
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgtgagac 46  Q
    |||||||||||||||||||||||||||| |||||||| ||||||    
T  9596271 ctttataaactcttctcaagaatcttatctatccgatatgagac 9596314  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 6782878 - 6782830
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgtgagacatggg 51  Q
    ||||||||||||||||||||| |||||| ||||||||||||||| ||||    
T  6782878 ctttataaactcttctcaagagtcttatctatccgatgtgagacttggg 6782830  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 6783090 - 6783042
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgtgagacatggg 51  Q
    ||||||||||||||||||||| |||||| ||||||||||||||| ||||    
T  6783090 ctttataaactcttctcaagagtcttatctatccgatgtgagacttggg 6783042  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 3762958 - 3762910
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgtgagacatggg 51  Q
    ||||||||||||||||||||| |||||| ||||||||||| ||||||||    
T  3762958 ctttataaactcttctcaagagtcttatctatccgatgtgggacatggg 3762910  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 14769884 - 14769927
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgtgagac 46  Q
    |||||||||||||||||||||||| ||| |||||||||||||||    
T  14769884 ctttataaactcttctcaagaatcctatctatccgatgtgagac 14769927  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 30870937 - 30870976
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgtg 42  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  30870937 ctttataaactcttctcaagaatcttatctatccgatgtg 30870976  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 35527040 - 35527088
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgtgagacatggg 51  Q
    ||||||||||||||||||||| |||||| ||||||||||| ||| ||||    
T  35527040 ctttataaactcttctcaagagtcttatctatccgatgtgggacttggg 35527088  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 38376783 - 38376735
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgtgagacatggg 51  Q
    ||||||||||||||||||||| |||||| ||||||||||| ||| ||||    
T  38376783 ctttataaactcttctcaagagtcttatctatccgatgtgggacttggg 38376735  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 43490308 - 43490356
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgtgagacatggg 51  Q
    ||||||||||||||||||||| |||||| ||||||||||| ||| ||||    
T  43490308 ctttataaactcttctcaagagtcttatctatccgatgtgggacttggg 43490356  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 29695391 - 29695439
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgtgagacatggg 51  Q
    ||||||||||||||||||||| |||||| ||||||||||||||| ||||    
T  29695391 ctttataaactcttctcaagagtcttatctatccgatgtgagacttggg 29695439  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 27545168 - 27545215
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgtgagacatgg 50  Q
    ||||||||||||||||||||| |||||| ||||||||||| |||||||    
T  27545168 ctttataaactcttctcaagagtcttatctatccgatgtgggacatgg 27545215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 28193388 - 28193430
Alignment:
Q  5 tttataaactcttctcaagaatcttat-tatccgatgtgagac 46  Q
    ||||||||||||||||||||||| ||| |||||||||||||||    
T  28193388 tttataaactcttctcaagaatcctatctatccgatgtgagac 28193430  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 883653 - 883701
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgtgagacatggg 51  Q
    ||||||||||||||||||||| |||||| ||||||||||| ||| ||||    
T  883653 ctttataaactcttctcaagagtcttatctatccgatgtgggacttggg 883701  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 12419890 - 12419842
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgtgagacatggg 51  Q
    ||||||||||||||||||||| |||||| ||||||||||| ||| ||||    
T  12419890 ctttataaactcttctcaagagtcttatctatccgatgtgggacttggg 12419842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 12431950 - 12431902
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgtgagacatggg 51  Q
    ||||||||||||||||||||| |||||| ||||||||||| ||| ||||    
T  12431950 ctttataaactcttctcaagagtcttatctatccgatgtgggacttggg 12431902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 17727456 - 17727408
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgtgagacatggg 51  Q
    ||||||||||||||||||||| |||||| ||||||||||| ||| ||||    
T  17727456 ctttataaactcttctcaagagtcttatctatccgatgtgggacttggg 17727408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 25621337 - 25621385
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgtgagacatggg 51  Q
    ||||||| ||||||||||||| |||||| ||||||||||||||| ||||    
T  25621337 ctttatatactcttctcaagagtcttatctatccgatgtgagacttggg 25621385  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 5269325 - 5269368
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgtgagac 46  Q
    ||||||||||||||||||||| |||||| |||||||||||||||    
T  5269325 ctttataaactcttctcaagagtcttatctatccgatgtgagac 5269368  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 24558840 - 24558795
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgtgagacat 48  Q
    |||||||||||||||| |||| |||||| |||||||||||||||||    
T  24558840 ctttataaactcttctaaagagtcttatctatccgatgtgagacat 24558795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 8427602 - 8427562
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgtga 43  Q
    |||| ||||||||||||||||||||||| ||||||||||||    
T  8427602 ctttctaaactcttctcaagaatcttatatatccgatgtga 8427562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 49380932 - 49380975
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgtgagac 46  Q
    ||||||||||||||||||||| |||||| |||||||||||||||    
T  49380932 ctttataaactcttctcaagagtcttatctatccgatgtgagac 49380975  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 49544384 - 49544345
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgtg 42  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  49544384 ctttataaactcttctcaagaatcttatctatccgatgtg 49544345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 52810677 - 52810715
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgt 41  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  52810677 ctttataaactcttctcaagaatcttatctatccgatgt 52810715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 1923043 - 1923091
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgtgagacatggg 51  Q
    ||||||||||||||||||||| |||||| |||| |||||| ||||||||    
T  1923043 ctttataaactcttctcaagagtcttatctatctgatgtgggacatggg 1923091  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 5488419 - 5488371
Alignment:
Q  4 ctttataaactcttctcaagaatctta-ttatccgatgtgagacatggg 51  Q
    ||||||||||||||||||||| ||||| |||||||||||| ||| ||||    
T  5488419 ctttataaactcttctcaagagtcttatttatccgatgtgggacttggg 5488371  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 29113501 - 29113453
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgtgagacatggg 51  Q
    ||||||||||||||||||||| |||||| |||| |||||| ||||||||    
T  29113501 ctttataaactcttctcaagagtcttatctatctgatgtgggacatggg 29113453  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 43943725 - 43943677
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgtgagacatggg 51  Q
    ||||||||||||||||||||| |||||| ||||||||||| ||| ||||    
T  43943725 ctttataaactcttctcaagagtcttatctatccgatgtgggacttggg 43943677  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 13959454 - 13959411
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgtgagac 46  Q
    ||||||||||||||||||||| |||||| |||||||||||||||    
T  13959454 ctttataaactcttctcaagagtcttatctatccgatgtgagac 13959411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 40521545 - 40521584
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgtg 42  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  40521545 ctttataaactcttctcaagaatcttatctatccgatgtg 40521584  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 39649136 - 39649184
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgtgagacatggg 51  Q
    ||||||||||||||||||||| |||||| ||||||||||| ||| ||||    
T  39649136 ctttataaactcttctcaagagtcttatctatccgatgtgggacttggg 39649184  T

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Target: scaffold0029 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 76904 - 76856
Alignment:
Q  4 ctttataaactcttctcaagaatcttat-tatccgatgtgagacatggg 51  Q
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T  76904 ctttataaactcttctcaagagtcttatctatccgatgtgggacttggg 76856  T

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