View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7326_low_3 (Length: 617)
Name: NF7326_low_3
Description: NF7326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7326_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 538; Significance: 0; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 17 - 593
Target Start/End: Complemental strand, 39840257 - 39839672
Alignment:
| Q |
17 |
ttattctgcggggtttcagaggagcagcgggcattttttgacgtacgtctgagagagaataagaaagaagaagcaattatgatagttatagaaattagac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39840257 |
ttattctgcggggtttcagaggagcagcgggcattttttgacgtacgtctgagagagaataagaaagaagaaccaattatgatagttatagaaattagac |
39840158 |
T |
|
| Q |
117 |
aacgataagataagtgtgaattggggcttagggtttgttgaatttctcaaaatccctaagccacaattctctacagtggaacacattattatcatcttcc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39840157 |
aacgataagataagtgtgaattggggcttagggtttgttcaatttctcaaaatccctaagccacaattctctacagtggaacacattattatcatcttcc |
39840058 |
T |
|
| Q |
217 |
attaacaaacaatattgagaatagtgaatgaaacataacgaacgaacaacagaacaatataaatgttaaactcactcaccaggtggtgaccttcgagcac |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39840057 |
attaacaaacaatattgagaatagtgaatgaaacataacgaacgaacaacagaacaatataaatgttaaactcactcaccaggtggtgaccttcgagcac |
39839958 |
T |
|
| Q |
317 |
gaaaactcaatagacgaagacgaaatctgctgactatttccgaggcggtaagatcagcagaagacgaagacgaaggatgatgttgcattttttgaagtgc |
416 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39839957 |
gaagactcaatagacgaagacgaaatctgctgactatttccgaggcggtaagatcagcagaagacgaagacgaaggatgatgttgcattttttgaagtgc |
39839858 |
T |
|
| Q |
417 |
gtctgagagtttgttcaattccatttctcaaaatccctaagcgggccccaattcacagaacaggcaagaaaatgaaaattattatgaat---------ta |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39839857 |
gtctgagagtttgttcaattccatttctcaaaatccctaagcgggccccaattcacagaacaggcaagaaaatgaaaattattatgaatggaaataaata |
39839758 |
T |
|
| Q |
508 |
cctttgctttgacgagaggaaccaaaccgcaggacaggacggtgaagaacgaacgagggagcgatagaaaacgaacaaggaagaag |
593 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39839757 |
cctttgctttgacgagaggaaccaaaccgcaggacaggacggtgaagaacgaacgagagagcgatagaaaacgaacaaggaagaag |
39839672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 47 - 443
Target Start/End: Original strand, 44798180 - 44798584
Alignment:
| Q |
47 |
gcattttttgacgtacgtctgagagagaataagaaagaagaagcaattatgatagttatagaaattagacaacga--taa-gataagtgtgaattggggc |
143 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||| | ||| | || | || ||||||||||||||||||| |
|
|
| T |
44798180 |
gcattttttgatgtacgtctgagagagaataataaagaagaagcaattatgaa--ttatgatatttaaagaagaaattagtgataagtgtgaattggggc |
44798277 |
T |
|
| Q |
144 |
ttagggtttgttgaatttctcaaaatccctaag-ccacaattctctacagtggaacacattattatcatcttccattaacaaacaatattgagaatagtg |
242 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| || |||||| |||| ||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44798278 |
ttagggtttgttcaatttctcaaaatccctaagcccccaattc---acagcggaacac---attatcatcttccattaacaaacaacattgagaatagtg |
44798371 |
T |
|
| Q |
243 |
aatgaaacataacgaacgaacaacagaacaatataaatgttaaactcactcacca---ggtggtgaccttcgagcacgaaaactcaatagacgaagacga |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44798372 |
aatgaaacataacgaacgaacaacagaacaatataaatgttaaactcactcaccaggtggtggtgaccttcgagcacgaagactcaatagacgaagacga |
44798471 |
T |
|
| Q |
340 |
aatctgctgactatttcc---gaggcggtaagatcagca------gaagacgaagacgaaggatgatgttgcattttttgaagtgcgtctgagagtttgt |
430 |
Q |
| |
|
|||||||||||||||||| | || |||| || ||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
44798472 |
aatctgctgactatttccaagggggtggtaggagcagcagaagacgaagacgaagacgaaggatgatgttccattttttgaagtaagtctgagagtttgt |
44798571 |
T |
|
| Q |
431 |
tcaattccatttc |
443 |
Q |
| |
|
||||||||||||| |
|
|
| T |
44798572 |
tcaattccatttc |
44798584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 125 - 391
Target Start/End: Complemental strand, 35161852 - 35161583
Alignment:
| Q |
125 |
gataagtgtgaattggggcttagggtttgttgaatttctcaaaatccctaagccacaattctctacagtggaacacattattatcatcttccattaacaa |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
35161852 |
gataagtgtgaattggggcttagggtttgttcaattactcaaaatccctaagccccaattctctaaagtggaacacattat---catcttccattaacaa |
35161756 |
T |
|
| Q |
225 |
acaatattgagaatagtgaatgaaacataacgaacgaacaacagaacaatataaatgttaaactcactcaccaggt---ggtgaccttcgagcacgaaaa |
321 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
35161755 |
acaacattgagaatagtgaatgaaacataacgaacgaacaacagaacaatataaatgttaaactcactcaccaggtggtggtgaccttcgagcacgaaga |
35161656 |
T |
|
| Q |
322 |
ctcaatagacgaagacgaaatctgctgactatttccga---ggcggtaagatcagcagaagacgaagacgaag |
391 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| || |||| || ||||||||||||||||||||| |
|
|
| T |
35161655 |
ctcaatacacgaagacgaaatctgctgactatttccgagggggtggtaggagcagcagaagacgaagacgaag |
35161583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 267 - 441
Target Start/End: Complemental strand, 39844923 - 39844740
Alignment:
| Q |
267 |
agaacaatataaatgttaaactcactcaccaggtggtg---accttcgagca------cgaaaactcaatagacgaagacgaaatctgctgactatttcc |
357 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||||||| | || || ||||||||||||| ||||||||||||||||| |
|
|
| T |
39844923 |
agaataatataaatgttaaactcactcaccaggtggtggtgaccttcgagcaaatggaccaagacgagatagacgaagacggtatctgctgactatttcc |
39844824 |
T |
|
| Q |
358 |
gaggcggtaagatcagcagaagacgaagacgaaggatgatgttgcattttttgaagtgcgtctgagagtttgttcaattccatt |
441 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
39844823 |
gagtcggtaagatcagcaaaagacgaagacgaaggatgatgttgcattttttgaagtgcgaccgagggtttgttcaattccatt |
39844740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 39845138 - 39845046
Alignment:
| Q |
20 |
ttctgcggggtttcagaggagcagcgggcattttttgacgtacgtctgagagagaataagaaagaagaagcaattatgatagttatagaaattag |
114 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39845138 |
ttctgcggggtttcagaggagcagcaggcattttttgatgtacgtctgaaaga--ataagaaagaagaagcaattatgatagttatagaaattag |
39845046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 39845024 - 39844963
Alignment:
| Q |
157 |
aatttctcaaaatccctaagccacaattctctacagtggaacacattattatcatcttccattaa |
221 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39845024 |
aatttctcaaaatccctaagccccaattctctacagtggaacaca---ttatcatcttccattaa |
39844963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 537 - 582
Target Start/End: Complemental strand, 35161441 - 35161396
Alignment:
| Q |
537 |
caggacaggacggtgaagaacgaacgagggagcgatagaaaacgaa |
582 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35161441 |
caggacaggacggtgaagaacgaacgagggagcgatagaaaacgaa |
35161396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 44631200 - 44631251
Alignment:
| Q |
47 |
gcattttttgacgtacgtctgagagagaataagaaagaagaagcaattatga |
98 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44631200 |
gcattttttgatgtacgtctgagagagaataataaagaagaagcaattatga |
44631251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 47 - 85
Target Start/End: Complemental strand, 35161925 - 35161887
Alignment:
| Q |
47 |
gcattttttgacgtacgtctgagagagaataagaaagaa |
85 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
35161925 |
gcattttttgacatacgtctgagagagaataataaagaa |
35161887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 547
Target Start/End: Complemental strand, 35161470 - 35161441
Alignment:
| Q |
518 |
gacgagaggaaccaaaccgcaggacaggac |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
35161470 |
gacgagaggaaccaaaccgcaggacaggac |
35161441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 385 - 425
Target Start/End: Original strand, 44631184 - 44631224
Alignment:
| Q |
385 |
gacgaaggatgatgttgcattttttgaagtgcgtctgagag |
425 |
Q |
| |
|
||||||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
44631184 |
gacgaaggaggatgttgcattttttgatgtacgtctgagag |
44631224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 385 - 425
Target Start/End: Original strand, 44798164 - 44798204
Alignment:
| Q |
385 |
gacgaaggatgatgttgcattttttgaagtgcgtctgagag |
425 |
Q |
| |
|
||||||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
44798164 |
gacgaaggaggatgttgcattttttgatgtacgtctgagag |
44798204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University