View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7326_low_8 (Length: 333)
Name: NF7326_low_8
Description: NF7326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7326_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 17 - 226
Target Start/End: Original strand, 408592 - 408801
Alignment:
| Q |
17 |
agttagaaattaggaagcagtgttcacagatgtgtgatcagattaagagggccagcaaattttgggaaatttggatgaaaaccagtgtcacacttgcctt |
116 |
Q |
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| T |
408592 |
agttagaaattaggaagcagtgttcacagatgtgtgatcagattaagagggccagcaaattttgggaaatttggatgaaaaccagtgtcacacttgcctt |
408691 |
T |
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| Q |
117 |
catcttgtaacttcttaatgatactttataactttttatgtaatagacgtaaattttcccaaactctttgtaactttttgaagagttgaaactttaggga |
216 |
Q |
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| T |
408692 |
catcttgtaacttcttaatgatactttataactttttatgtaatagacgtaaattttctcaaactctttgtaactttttgaagagttgaaactttaggga |
408791 |
T |
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| Q |
217 |
tagtttcaaa |
226 |
Q |
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|||||||||| |
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| T |
408792 |
tagtttcaaa |
408801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 228 - 313
Target Start/End: Original strand, 412871 - 412958
Alignment:
| Q |
228 |
ctaaatttaagatgtttgtatacaaacccttgttctataatgttctgtatctatct--agctttttatctgttttctttacatgtatg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
412871 |
ctaaatttaagatgtttgtatacaaacccttgttctataatgttctgtatctatctaaagctttttatctgttttctttacatgtatg |
412958 |
T |
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