View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7326_low_9 (Length: 319)

Name: NF7326_low_9
Description: NF7326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7326_low_9
NF7326_low_9
[»] chr7 (14 HSPs)
chr7 (9-301)||(11815825-11816117)
chr7 (9-256)||(11809621-11809870)
chr7 (9-298)||(11811232-11811525)
chr7 (9-298)||(11812825-11813115)
chr7 (9-290)||(11808228-11808506)
chr7 (166-298)||(11814716-11814847)
chr7 (68-228)||(11816414-11816573)
chr7 (127-292)||(11820864-11821029)
chr7 (81-228)||(11813832-11813978)
chr7 (68-222)||(11814958-11815111)
chr7 (68-230)||(11819948-11820109)
chr7 (127-228)||(11808700-11808801)
chr7 (86-228)||(11812013-11812154)
chr7 (88-228)||(11810358-11810497)
[»] chr8 (2 HSPs)
chr8 (92-229)||(44252828-44252964)
chr8 (70-221)||(44249226-44249376)
[»] chr5 (1 HSPs)
chr5 (34-159)||(15273986-15274110)


Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 9 - 301
Target Start/End: Complemental strand, 11816117 - 11815825
Alignment:
Q  9 gaagaatattttgagagtgtcacaactagaagaaattttctcacataaaagttttttccgtgtaatcttaattattgtcttttttgtaccacatgtagtt 108  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11816117 gaagaaaattttgagagtgtcacaactagaagaaattttctcacataaaagtttattccgtgtaatcttaattattgtcttttttgtaccacatgtagtt 11816018  T
Q  109 ttaattattaaaaaacacattgaatggtgcagatgggcgtcggacctcctctactggaaacatcacgaaagaggatccaagtacgtgttacaacactttc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  11816017 ttaattattaaaaaacacattgaatggtgcagatgggcgtcggacctcctctagtggaaacttcacgaaagaggatccaagtacgtgttacaacactttc 11815918  T
Q  209 ttctcttatcaaatcaattttagctacaatatggtatcacatatgtcagaaactttgattttacgtctacatgtaaacattaggtgatacgac 301  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11815917 ttctcttatcaaatcaattttagctacaatatggtatcgcatatgtcagaaactttgatgttacgtctacatgtaaacattaggtgatacgac 11815825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 9 - 256
Target Start/End: Complemental strand, 11809870 - 11809621
Alignment:
Q  9 gaagaatattttgagagtgtcacaactagaagaaattttctcacataaaagttttttcc-gtgtaatcttaattattgtctttttt----gtaccacatg 103  Q
    ||||||||||||| ||||||||||||||||||| |||||||| |||||||||||| ||| ||||||| | ||||||||||||||||    ||||||||||    
T  11809870 gaagaatattttgggagtgtcacaactagaagagattttctcgcataaaagttttctcctgtgtaatttcaattattgtcttttttttttgtaccacatg 11809771  T
Q  104 tagttttaattattaaaaaacacattgaatggtgcagatgggcgtcggacctcctctactggaaacatcacgaaagaggatccaagtacgtgttacaaca 203  Q
    |||||| ||||||||||||  | ||||||| ||||||||||||||| |||||||| || ||||||| |||||||||| ||||||||||||||||||||||    
T  11809770 tagtttcaattattaaaaataa-attgaatagtgcagatgggcgtcagacctcctatagtggaaacttcacgaaagatgatccaagtacgtgttacaaca 11809672  T
Q  204 ctttcttctcttatcaaatcaattttagctacaatatggtatcacatatgtca 256  Q
    |||||||||||||  ||||||||| |||  ||||||||||| |||||||||||    
T  11809671 ctttcttctctta--aaatcaattatagtcacaatatggtaacacatatgtca 11809621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 298
Target Start/End: Complemental strand, 11811525 - 11811232
Alignment:
Q  9 gaagaatattttgagagtgtcacaactagaagaaattttctcacataaaagttttttccgt-gtaatcttaattattgtcttttttgtaccacatgtagt 107  Q
    |||||| |||||  |||||||  ||||| |||| |||||||| ||||||||  || ||| | ||||||| || ||||||| |||||||||||||||||||    
T  11811525 gaagaaaattttaggagtgtccaaactaaaagatattttctcccataaaagaattctcccttgtaatctcaactattgtcatttttgtaccacatgtagt 11811426  T
Q  108 tttaattattaaaaaacacat---tgaatggtgcagatgggcgtcggacctcctctactggaaacatcacgaaagaggatccaagtacgtgttacaacac 204  Q
    || ||||||||||||| | |    |||||||||||||||| |||| ||||||||||  ||||||| ||||||||||| |||||||||||||||| |||||    
T  11811425 ttcaattattaaaaaaaataaaaatgaatggtgcagatggacgtcagacctcctctgatggaaacttcacgaaagagaatccaagtacgtgttataacac 11811326  T
Q  205 tttcttctcttatcaaatcaattttagctacaatatggtatcacatatgtcagaaactttgattttacgtctacatgtaaacattaggtgatac 298  Q
    |||||||| ||||||||||||||||||  ||||||||||| |||||||||||||||||||||| | | || ||||||||||||||||| |||||    
T  11811325 tttcttcttttatcaaatcaattttagtcacaatatggtaacacatatgtcagaaactttgatgtaatgtttacatgtaaacattaggggatac 11811232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 298
Target Start/End: Complemental strand, 11813115 - 11812825
Alignment:
Q  9 gaagaatattttgagagtgtcacaactagaagaaattttctcacataaaagttttttccg-tgtaatcttaattattgtcttttttgtaccacatgtagt 107  Q
    |||||| ||||||  |||||||||||||||||| |||||||| || ||||||||| |||| | |||||| ||||||||||| |||||||| |||| ||||    
T  11813115 gaagaaaattttggaagtgtcacaactagaagagattttctcccacaaaagttttctccggtataatctcaattattgtctgttttgtactacatatagt 11813016  T
Q  108 tttaattattaaaaaacac-attgaatggtgcagatgggcgtcggacctcctctactggaaacatcacgaaagaggatccaagtacgtgttacaacactt 206  Q
    || ||||||||||||| |  | | |||||||||||||||| || ||||||||| | ||||||| |||||||| |||||||||||||| ||||  | ||||    
T  11813015 ttcaattattaaaaaataataattaatggtgcagatgggcctcagacctcctccaatggaaacttcacgaaacaggatccaagtacgagttagtatactt 11812916  T
Q  207 tcttctcttatcaaatcaattttagctacaatatggtatcacatatgtcagaaactttgattttacgtctacatgtaaacattaggtgatac 298  Q
    |||||||||||||||||||||||||  ||||||||||| |||||||| || |||||||||||| ||||||||||||||| |||||| |||||    
T  11812915 tcttctcttatcaaatcaattttagtcacaatatggtaacacatatggcaaaaactttgatttcacgtctacatgtaaa-attaggggatac 11812825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 9 - 290
Target Start/End: Complemental strand, 11808506 - 11808228
Alignment:
Q  9 gaagaatattttgagagtgtcacaactagaagaaattttctcacataaaagttttttccgtgtaatcttaattattgtcttttttgtaccacatgtagtt 108  Q
    ||||||||||||| |||||||||| |||||||| ||||||||   |||||||||| | | |||||||| ||||||| ||||||||||||||| || ||||    
T  11808506 gaagaatattttgggagtgtcacatctagaagacattttctcctgtaaaagttttcttcatgtaatctcaattattttcttttttgtaccacgtgcagtt 11808407  T
Q  109 ttaattattaaaaaacacattgaatggtgcagatgggcgtcggacctcct-ctactggaaacatcacgaaagaggatccaagtacgtgttacaacacttt 207  Q
    | ||||| ||| ||| | ||||||||||  ||||| || || |||| ||| | || |||||| |||||||||||||||||||||||||||||||||||||    
T  11808406 tcaattactaataaaaa-attgaatggtagagatgagcatcagaccaccttcgac-ggaaacttcacgaaagaggatccaagtacgtgttacaacacttt 11808309  T
Q  208 cttctcttatcaaatcaattttagctacaatatggtatcacatatgtcagaaactttgattttacgtctacatgtaaacatta 290  Q
    ||||||||||||||| ||||||||  ||| |||||||  ||| || | | |||||||||| |||||| |||| ||||||||||    
T  11808308 cttctcttatcaaattaattttagtcacactatggta--acacattttaaaaactttgatattacgtgtacaagtaaacatta 11808228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 166 - 298
Target Start/End: Complemental strand, 11814847 - 11814716
Alignment:
Q  166 aaacatcacgaaagaggatccaagtacgtgttacaacactttcttctcttatcaaatcaattttagctacaatatggtatcacatatgtcagaaactttg 265  Q
    |||| ||||||||||||||||||||| | ||||  |||||||||||||||||||||||||||||||  ||||||||||| ||  ||||||||||||||||    
T  11814847 aaacttcacgaaagaggatccaagtatgagttagtacactttcttctcttatcaaatcaattttagtcacaatatggtaacaattatgtcagaaactttg 11814748  T
Q  266 attttacgtctacatgtaaacattaggtgatac 298  Q
    |||| ||||||||||||||| |||||| |||||    
T  11814747 atttcacgtctacatgtaaa-attaggggatac 11814716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 68 - 228
Target Start/End: Complemental strand, 11816573 - 11816414
Alignment:
Q  68 gtgtaatcttaattattgtcttttttgtaccacatgtagttttaattattaaaaaacacattgaatggtgcagatgggcgtcggacctcctctactggaa 167  Q
    ||||||||| ||||||| |||||||||||||||||| ||||| |||||||||  || | ||||||||||| |||||| | ||  |||| ||||  |||||    
T  11816573 gtgtaatctaaattattatcttttttgtaccacatgcagtttcaattattaatgaaaa-attgaatggtggagatggacatcataccttctctggtggaa 11816475  T
Q  168 acatcacgaaagaggatccaagtacgtgttacaacactttcttctcttatcaaatcaattt 228  Q
    || ||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  11816474 acttcacggaagaggatccaagtacgtgttacaacactttcttcacttatcaaattaattt 11816414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 127 - 292
Target Start/End: Complemental strand, 11821029 - 11820864
Alignment:
Q  127 attgaatggtgcagatgggcgtcggacctcctctactggaaacatcacgaaagaggatccaagtacgtgttacaacactttcttctcttatcaaatcaat 226  Q
    |||| |||||| |||||||| |||||||||||    ||| ||| ||||| ||||||||| |||||||||||||||||||||||||||| || ||||||||    
T  11821029 attggatggtggagatgggcatcggacctccttcgatgggaacttcacggaagaggatctaagtacgtgttacaacactttcttctctaataaaatcaat 11820930  T
Q  227 tttagctacaatatggtatcacatatgtcagaaactttgattttacgtctacatgtaaacattagg 292  Q
    |||||  | | ||||||| ||||||||||| |||||||||| | |||||||||  |||||||||||    
T  11820929 tttagtcatactatggtaacacatatgtcaaaaactttgatgtcacgtctacaactaaacattagg 11820864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 81 - 228
Target Start/End: Complemental strand, 11813978 - 11813832
Alignment:
Q  81 tattgtcttttttgtaccacatgtagttttaattattaaaaaacacattgaatggtgcagatgggcgtcggacctcctctactggaaacatcacgaaaga 180  Q
    ||||||||||||||||||||||| ||||| |||||||||  || | ||||||||||| |||| | | ||  |||||| ||  ||||||| ||||| ||||    
T  11813978 tattgtcttttttgtaccacatgcagtttcaattattaatgaa-atattgaatggtggagatcgacatcatacctcccctggtggaaacttcacggaaga 11813880  T
Q  181 ggatccaagtacgtgttacaacactttcttctcttatcaaatcaattt 228  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  11813879 ggatccaagtacgtgttacaacactttcttctcttatcaaattaattt 11813832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 222
Target Start/End: Complemental strand, 11815111 - 11814958
Alignment:
Q  68 gtgtaatcttaattattgtcttttttgtaccacatgtagttttaattattaaaaaacacattgaatggtgcagatgggcgtcggacctcctctactggaa 167  Q
    ||||||||  || ||||||||||||| |||| |||| ||||| |||||||||  || | | ||||||||| |||||| | ||  |||||  ||  |||||    
T  11815111 gtgtaatcaaaactattgtcttttttataccgcatgcagtttcaattattaatgaa-atactgaatggtggagatggacatcatacctctcctggtggaa 11815013  T
Q  168 acatcacgaaagaggatccaagtacgtgttacaacactttcttctcttatcaaat 222  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11815012 acttcacgaaagaggatccaagtacgtgttacaacactttcttctcttatcaaat 11814958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 230
Target Start/End: Complemental strand, 11820109 - 11819948
Alignment:
Q  68 gtgtaatcttaattattgtcttttttgtaccacatgtagttttaattattaaaaaacacattgaatggtgcagatgggcgtcggacctcctctactggaa 167  Q
    ||||||||| || ||||||| ||||| ||||||||| ||||| |||||||||  || | ||||||||||| ||||| || ||  ||||||||   |||||    
T  11820109 gtgtaatctaaactattgtcatttttataccacatgcagtttcaattattaatgaaga-attgaatggtggagatgagcatcatacctcctccggtggaa 11820011  T
Q  168 acatcacgaaagaggatccaagtacgtgttacaacactttcttctcttatcaaatcaatttta 230  Q
    ||  |||| ||| ||||||||||| || |||||||| ||||||||| |||||||| |||||||    
T  11820010 actccacggaagtggatccaagtatgttttacaacaatttcttctcctatcaaattaatttta 11819948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 11808801 - 11808700
Alignment:
Q  127 attgaatggtgcagatgggcgtcggacctcctctactggaaacatcacgaaagaggatccaagtacgtgttacaacactttcttctcttatcaaatcaat 226  Q
    ||||||||||| |||||||||||  |||||||||  ||||||   ||| |||||||| |||||||||||||||||||||||||| ||||| ||||| |||    
T  11808801 attgaatggtggagatgggcgtcatacctcctctggtggaaattccacaaaagaggaaccaagtacgtgttacaacactttcttgtcttaccaaattaat 11808702  T
Q  227 tt 228  Q
    ||    
T  11808701 tt 11808700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 228
Target Start/End: Complemental strand, 11812154 - 11812013
Alignment:
Q  86 tcttttttgtaccacatgtagttttaattattaaaaaacacattgaatggtgcagatgggcgtcggacctcctctactggaaacatcacgaaagaggatc 185  Q
    |||||||||||||||||| || || |||||||||  || | |||||||  || ||||||||  |  |||||||| | ||||||| | ||| ||||| |||    
T  11812154 tcttttttgtaccacatgcagattcaattattaatgaa-atattgaatcatggagatgggcaccatacctcctcaagtggaaactttacggaagagaatc 11812056  T
Q  186 caagtacgtgttacaacactttcttctcttatcaaatcaattt 228  Q
    |||||| ||||||||||| |||||||| || |||||| |||||    
T  11812055 caagtatgtgttacaacattttcttctgttttcaaattaattt 11812013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 228
Target Start/End: Complemental strand, 11810497 - 11810358
Alignment:
Q  88 ttttttgtaccacatgtagttttaattattaaaaaacacattgaatggtgcagatgggcgtcggacctcctctactggaaacatcacgaaagaggatcca 187  Q
    |||||||||||||||| ||||| |||||||||  || | ||||| ||||| |||| ||| ||    |||||||| ||||||| | ||  ||||| ||| |    
T  11810497 ttttttgtaccacatgcagtttcaattattaatgaa-atattgattggtggagatcggcatcatttctcctctagtggaaactttacagaagagaatcta 11810399  T
Q  188 agtacgtgttacaacactttcttctcttatcaaatcaattt 228  Q
    |||||||||||||| | ||| |||||||||||||| |||||    
T  11810398 agtacgtgttacaatattttattctcttatcaaattaattt 11810358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 92 - 229
Target Start/End: Complemental strand, 44252964 - 44252828
Alignment:
Q  92 ttgtaccacatgtagttttaattattaaaaaacacattgaatggtgcagatgggcgtcggacctcctctactggaaacatcacgaaagaggatccaagta 191  Q
    ||||||||| || |||||||||||| |||||  | ||||||||||| ||||| |  ||  |||||||| | ||||||| ||||| |||||||| ||||||    
T  44252964 ttgtaccacgtgcagttttaattatgaaaaataa-attgaatggtggagatgagaatcatacctcctccaatggaaacttcacggaagaggatacaagta 44252866  T
Q  192 cgtgttacaacactttcttctcttatcaaatcaatttt 229  Q
     |||||||||||||||||||||||||||||| ||||||    
T  44252865 agtgttacaacactttcttctcttatcaaattaatttt 44252828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 70 - 221
Target Start/End: Complemental strand, 44249376 - 44249226
Alignment:
Q  70 gtaatcttaattattgtcttttttgtaccacatgtagttttaattattaaaaaacacattgaatggtgcagatgggcgtcggacctcctctactggaaac 169  Q
    ||||||| || ||||||||||||||||| ||||| ||||| || ||  |||||| |  ||| |||||| |||||||| ||  |||||||    |||||||    
T  44249376 gtaatctaaactattgtcttttttgtactacatgcagtttcaagtacaaaaaaagat-ttggatggtggagatgggcatcacacctccttcgatggaaac 44249278  T
Q  170 atcacgaaagaggatccaagtacgtgttacaacactttcttctcttatcaaa 221  Q
     ||||| ||||| | | |||||||||||||||||||||||| ||||||||||    
T  44249277 ttcacggaagagaaacgaagtacgtgttacaacactttcttatcttatcaaa 44249226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 159
Target Start/End: Original strand, 15273986 - 15274110
Alignment:
Q  34 ctagaagaaattttctcacataaaagttttttcc-gtgtaatcttaattattgtcttttttgtaccacatgtagttttaattattaaaaaacacattgaa 132  Q
    |||||||| || |||||  ||||||||||| ||| ||||||| |||| ||||||||||||| ||| ||||  ||||| ||| |||||||  || ||||||    
T  15273986 ctagaagagatcttctcctataaaagttttctcccgtgtaatgttaactattgtctttttt-tactacatacagtttcaataattaaaacgca-attgaa 15274083  T
Q  133 tggtgcagatgggcgtcggacctcctc 159  Q
    ||||| |||||||| || || ||||||    
T  15274084 tggtggagatgggcctcagatctcctc 15274110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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