View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7327_low_1 (Length: 390)
Name: NF7327_low_1
Description: NF7327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7327_low_1 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 373
Target Start/End: Original strand, 28609053 - 28609415
Alignment:
| Q |
11 |
tggacatcacaagtcatgataaagcaaggggcatattatctatggtaatggatagtgagaaacaaaaggaattagatgatgagtatgttaatggatttag |
110 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28609053 |
tggacaccacaagtcatgataaagcaaggggcatattatctattgtaatggatagtgagaagcaaaaggaattagatgatgagtatgttaatggatttag |
28609152 |
T |
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| Q |
111 |
attgacaacgatgaacagcaatgattctatatcttattcagaagttgatgtccattctgctgaagatattcccacatccctcaatgagatagaaaaaatt |
210 |
Q |
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| T |
28609153 |
attgacaacgatgaacaacaatgattctatatcttattcagaagttgatgtccattctgctgaagatattcccacatccctcaatgagatagaaaaaatt |
28609252 |
T |
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| Q |
211 |
ggttgcgatttatacgtagttggacagggaaatcgtaggaacactcgagtctttttaaacttattggaatggtgtgactgtccagaacttggggttttag |
310 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28609253 |
ggttgcgatttatacatagttggacagggaaatcgtaggaacactcgagtctttttaaacttattggaatggtgtgactgtccagaacttggggttttag |
28609352 |
T |
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| Q |
311 |
gggatattttagcatcaaacaattttggttcgggctcatcagtgctagttgtgcaacaatatg |
373 |
Q |
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| T |
28609353 |
gggatattttagcatcaaacaattttggttcgggctcatcagtgctagttgtgcaacaatatg |
28609415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 183; Significance: 7e-99; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 47 - 373
Target Start/End: Complemental strand, 437815 - 437489
Alignment:
| Q |
47 |
tatctatggtaatggatagtgagaaacaaaaggaattagatgatgagtatgttaatggatttagattgacaacgatgaacagcaatgattctatatctta |
146 |
Q |
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| T |
437815 |
tatctattgtaatggatagtgagaagcagaaggagttagatgatgagtatgtgaatggatttagattgacagcgatgaacaacaatgattctatatctta |
437716 |
T |
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| Q |
147 |
ttcagaagttgatgtccattctgctgaagatattcccacatccctcaatgagatagaaaaaattggttgcgatttatacgtagttggacagggaaatcgt |
246 |
Q |
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| T |
437715 |
ttcagaagttaatgtccattcaggtgaagatattcccacaaccctcaatgaactagaaaatttttattgcaatttatatatagttggacaagggaatcgt |
437616 |
T |
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| Q |
247 |
aggaacactcgagtctttttaaacttattggaatggtgtgactgtccagaacttggggttttaggggatattttagcatcaaacaattttggttcgggct |
346 |
Q |
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| T |
437615 |
aggaacaatcgtgtctttttaaatttattggactggtgtgattgtccagaacttggagttttaggggacattttggcatcagataattttgtttcgagat |
437516 |
T |
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| Q |
347 |
catcagtgctagttgtgcaacaatatg |
373 |
Q |
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| T |
437515 |
catctgtgctagttgtgcaacaatatg |
437489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 44 - 373
Target Start/End: Original strand, 13652957 - 13653286
Alignment:
| Q |
44 |
tattatctatggtaatggatagtgagaaacaaaaggaattagatgatgagtatgttaatggatttagattgacaacgatgaacagcaatgattctatatc |
143 |
Q |
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| T |
13652957 |
tattatctgttgtaatggataatgagaagcagaaggatctagacgaagaatatgtaaattcatttagactgaaagcagtgaataacaatgattttatatc |
13653056 |
T |
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| Q |
144 |
ttattcagaagttgatgtccattctgctgaagatattcccacatccctcaatgagatagaaaaaattggttgcgatttatacgtagttggacagggaaat |
243 |
Q |
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| T |
13653057 |
ctattcagaggttgatgtccattcaggtgaagatattcccacaatccttgatgatttagacaaatttggttgtgatttatacatagttggacaagggcat |
13653156 |
T |
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| Q |
244 |
cgtaggaacactcgagtctttttaaacttattggaatggtgtgactgtccagaacttggggttttaggggatattttagcatcaaacaattttggttcgg |
343 |
Q |
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| T |
13653157 |
catagaaatgttcgagccttttcaagtttattggaatggtgtgattgtccagaacttggagttatcggggatatgttggcatcaaacaattttagttcgg |
13653256 |
T |
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| Q |
344 |
gctcatcagtgctagttgtgcaacaatatg |
373 |
Q |
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| T |
13653257 |
gttcatcagtgttagttgtgcaacaatatg |
13653286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 40 - 373
Target Start/End: Original strand, 13660453 - 13660786
Alignment:
| Q |
40 |
ggcatattatctatggtaatggatagtgagaaacaaaaggaattagatgatgagtatgttaatggatttagattgacaacgatgaacagcaatgattcta |
139 |
Q |
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|||||||||||| | |||||||||| |||||| || ||||| |||| || || ||||| ||| ||||||| ||| | | |||| | ||||||||||| |
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| T |
13660453 |
ggcatattatctgttgtaatggataatgagaagcagaaggatctagacgaagaatatgtaaattcatttagactgaaagcagtgaataacaatgattcta |
13660552 |
T |
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| Q |
140 |
tatcttattcagaagttgatgtccattctgctgaagatattcccacatccctcaatgagatagaaaaaattggttgcgatttatacgtagttggacaggg |
239 |
Q |
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|||| ||||| || |||||||||||||| |||||||||||||||| ||||||||| |||| ||| |||||| ||||||||| |||||||||| || |
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| T |
13660553 |
tatcatattcggaggttgatgtccattcaagtgaagatattcccacaatcctcaatgatttagacaaatttggttatgatttatacatagttggacaagg |
13660652 |
T |
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| Q |
240 |
aaatcgtaggaacactcgagtctttttaaacttattggaatggtgtgactgtccagaacttggggttttaggggatattttagcatcaaacaattttggt |
339 |
Q |
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||| ||| || ||||| ||||| || ||||||||||||||||| |||||||||||||| ||| | |||||||| || ||||||||||||||| || |
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| T |
13660653 |
gcatcatagaaatgttcgagccttttcaagtttattggaatggtgtgattgtccagaacttggagttatcggggatatgttggcatcaaacaattttagt |
13660752 |
T |
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| Q |
340 |
tcgggctcatcagtgctagttgtgcaacaatatg |
373 |
Q |
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| T |
13660753 |
tcgggttcgtctgtgctcgttgtgcaacaatatg |
13660786 |
T |
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