View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7327_low_2 (Length: 354)
Name: NF7327_low_2
Description: NF7327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7327_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 341
Target Start/End: Original strand, 1665264 - 1665589
Alignment:
| Q |
16 |
acatcacttatatgccaattgaaatcttgaccattgatcttgcaaagtttaagctccttaagtgaacggctaagcctatcaacactatcagtaatttctt |
115 |
Q |
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| T |
1665264 |
acattacttatatgccaattgaaatcttgaccattgatcttgcaaagtttaagctccttaagtgaacggctaagcctatcaacactatcagtaatttctt |
1665363 |
T |
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| Q |
116 |
caacacaatcatgaagagcagcatattctcttggtttaagacctttaaactttttgcactttgtaacaaagccttttgtggattgagttttgtttaggct |
215 |
Q |
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| T |
1665364 |
caacacaatcatgaagagcagcatattctcttggtttaagacctttaaactttttgcactttgtaacaaagccttttgtggattgagttttgtttaggct |
1665463 |
T |
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| Q |
216 |
aagtgataaagctgtttggaccaattgatgagggtcttgttggattgttgttgcatagacagagagagattcaacacaaagtgttgggtatgatgttgtg |
315 |
Q |
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| T |
1665464 |
aagtgataaagctgtttggaccaattgatgagggtcttgttggattgttgttgcatagacagagagagattcaacacaaagtgttgggtatgatgttgtg |
1665563 |
T |
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| Q |
316 |
ctacatgaggatttgatgaagtttgt |
341 |
Q |
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| T |
1665564 |
ctacatgaggatttgatgaagtttgt |
1665589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 22 - 341
Target Start/End: Original strand, 1675233 - 1675552
Alignment:
| Q |
22 |
cttatatgccaattgaaatcttgaccattgatcttgcaaagtttaagctccttaagtgaacggctaagcctatcaacactatcagtaatttcttcaacac |
121 |
Q |
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| T |
1675233 |
cttatatgccaactgaaatcctcaccttggatcttgcaaagtttaagctcttttagtgaacggctaagcctatcaacactatcagtgatttcttcaacac |
1675332 |
T |
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| Q |
122 |
aatcatgaagagcagcatattctcttggtttaagacctttaaactttttgcactttgtaacaaagccttttgtggattgagttttgtttaggctaagtga |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
1675333 |
aatcatgaagagcagcatattctcttggtttaagacctttgaaacttttgcactttgtaacaaagcctttagtggattgagttttgttcaggctaagtga |
1675432 |
T |
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| Q |
222 |
taaagctgtttggaccaattgatgagggtcttgttggattgttgttgcatagacagagagagattcaacacaaagtgttgggtatgatgttgtgctacat |
321 |
Q |
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| T |
1675433 |
taaagctgtttggaccaattgatgagggtcttgttggattgttgttgcatagacagagagagattcaacacaaagtgttgggtatgatgttgtgctacat |
1675532 |
T |
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| Q |
322 |
gaggatttgatgaagtttgt |
341 |
Q |
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|||||||||||||||||||| |
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| T |
1675533 |
gaggatttgatgaagtttgt |
1675552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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