View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7328_low_7 (Length: 232)
Name: NF7328_low_7
Description: NF7328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7328_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 43312031 - 43311832
Alignment:
| Q |
19 |
accagtattaaacctcgagaccaaacccgagcctaatggtattgttgattctgatgacattgttaattggctcgatgaccaacctctttcgtccgtagtt |
118 |
Q |
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| T |
43312031 |
accagtattaaaccttgagaccaaacccgagcctaatggtattgttgattctgatgacattgttaattggctcgatgaccaacctctttcgtccgtagtt |
43311932 |
T |
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| Q |
119 |
tatctttgctttgggagcaagggttctttcgatgaggatcaaattagggagattgcgtatgctattgagaaaagtgaggctcgcttcctgtggtctctgc |
218 |
Q |
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| T |
43311931 |
tatctttgctttgggagcaagggttctttcgatgaggatcaaattagggagattgcgtatgctattgagaaaagtgaggctcgcttcctgtggtctctgc |
43311832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 216
Target Start/End: Original strand, 39451739 - 39451869
Alignment:
| Q |
86 |
tggctcgatgaccaacctctttcgtccgtagtttatctttgctttgggagcaagggttctttcgatgaggatcaaattagggagattgcgtatgctattg |
185 |
Q |
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| T |
39451739 |
tggcttgatgatcaacctctttcttctgttgttttcctctgctttgggagcaggggttgtttcgatgaggaccaggttaaggagatcgcacatgctattg |
39451838 |
T |
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| Q |
186 |
agaaaagtgaggctcgcttcctgtggtctct |
216 |
Q |
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| T |
39451839 |
agaatagtggggcccacttcgtatggtctct |
39451869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 204
Target Start/End: Complemental strand, 39463991 - 39463873
Alignment:
| Q |
86 |
tggctcgatgaccaacctctttcgtccgtagtttatctttgctttgggagcaagggttctttcgatgaggatcaaattagggagattgcgtatgctattg |
185 |
Q |
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| T |
39463991 |
tggcttgatgatcaacctccttcctcagtagttttcctctgcttcgggagcagaggttctttcgatgaagatcaggttaaggagattgcacttgctattg |
39463892 |
T |
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| Q |
186 |
agaaaagtgaggctcgctt |
204 |
Q |
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|||| |||| ||||||||| |
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| T |
39463891 |
agaatagtggggctcgctt |
39463873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 218
Target Start/End: Original strand, 39476251 - 39476383
Alignment:
| Q |
86 |
tggctcgatgaccaacctctttcgtccgtagtttatctttgctttgggagcaagggttctttcgatgaggatcaaattagggagattgcgtatgctattg |
185 |
Q |
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| T |
39476251 |
tggcttgatgatcaacctccttcctccgtagttttcctctgcttcgggagtaggggttattttgatgaagatcaggttaaggagatcgcacatgctgttg |
39476350 |
T |
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| Q |
186 |
agaaaagtgaggctcgcttcctgtggtctctgc |
218 |
Q |
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|||| |||| ||| |||||| |||||||||||| |
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| T |
39476351 |
agaatagtggggcacgcttcgtgtggtctctgc |
39476383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 189
Target Start/End: Original strand, 39455366 - 39455469
Alignment:
| Q |
86 |
tggctcgatgaccaacctctttcgtccgtagtttatctttgctttgggagcaagggttctttcgatgaggatcaaattagggagattgcgtatgctattg |
185 |
Q |
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||||| ||||| ||||||||||| ||||| |||| |||||||| || ||||| |||| ||| ||||||||||| ||| |||||| || | |||||||| |
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| T |
39455366 |
tggcttgatgatcaacctctttcctccgtcgttttcctttgcttcggaagcaaaggttgttttgatgaggatcaggttaaggagatcgcatgtgctattg |
39455465 |
T |
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| Q |
186 |
agaa |
189 |
Q |
| |
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|||| |
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| T |
39455466 |
agaa |
39455469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 189
Target Start/End: Original strand, 39487204 - 39487307
Alignment:
| Q |
86 |
tggctcgatgaccaacctctttcgtccgtagtttatctttgctttgggagcaagggttctttcgatgaggatcaaattagggagattgcgtatgctattg |
185 |
Q |
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||||| ||||| ||||||| ||| || ||||||| || ||||| ||||||| ||| ||||||||||||||||| ||| |||||||| ||||||||| |
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| T |
39487204 |
tggcttgatgatcaacctccttcctcggtagttttcctctgcttcgggagcaggggctctttcgatgaggatcaggttaaagagattgcacatgctattg |
39487303 |
T |
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| Q |
186 |
agaa |
189 |
Q |
| |
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|||| |
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| T |
39487304 |
agaa |
39487307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 171
Target Start/End: Original strand, 39460989 - 39461074
Alignment:
| Q |
86 |
tggctcgatgaccaacctctttcgtccgtagtttatctttgctttgggagcaagggttctttcgatgaggatcaaattagggagat |
171 |
Q |
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| T |
39460989 |
tggcttgatgatcaacctctttcctccgtagttttcctctgctttgggactaggggtaccttcgatgaggatcagattaaggagat |
39461074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 218
Target Start/End: Original strand, 39484014 - 39484134
Alignment:
| Q |
98 |
caacctctttcgtccgtagtttatctttgctttgggagcaagggttctttcgatgaggatcaaattagggagattgcgtatgctattgagaaaagtgagg |
197 |
Q |
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||||||| ||| |||||||||| || ||||||||||| | ||||| ||| ||||| ||||| ||| |||||| || ||| | ||||||| |||| || |
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| T |
39484014 |
caacctccttcctccgtagttttcctctgctttgggagtaggggttattttgatgaagatcaggttaaggagatcgcacatgttgttgagaatagtgggg |
39484113 |
T |
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| Q |
198 |
ctcgcttcctgtggtctctgc |
218 |
Q |
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| T |
39484114 |
cacgcttcgtgtggtctctgc |
39484134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 159
Target Start/End: Complemental strand, 39470217 - 39470121
Alignment:
| Q |
62 |
gttgattctgatgacattgttaattggctcgatgaccaacctctttcgtccgtagtttatctttgctttgggagcaagggttctttcgatgaggatca |
159 |
Q |
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| T |
39470217 |
gttgattctgacgatattgtcaagtggcttgatgatcagcctccttcctcggtagttttcctctgcttcgggagc-agggttttttcgatgaggatca |
39470121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 159
Target Start/End: Complemental strand, 39457752 - 39457656
Alignment:
| Q |
63 |
ttgattctgatgacattgttaattggctcgatgaccaacctctttcgtccgtagtttatctttgctttgggagcaagggttctttcgatgaggatca |
159 |
Q |
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|||||||||| || ||||| || ||||| ||||| ||||||| ||| || | ||||| || ||||| ||||||| ||| | ||||||||||||||| |
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| T |
39457752 |
ttgattctgacgatattgtcaagtggcttgatgatcaacctccttcctcggaagttttcctctgcttcgggagcagggggtttttcgatgaggatca |
39457656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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