View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7329_high_4 (Length: 271)
Name: NF7329_high_4
Description: NF7329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7329_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 262
Target Start/End: Complemental strand, 25516691 - 25516446
Alignment:
| Q |
17 |
cactcatgattattaagaagctgggaatctgcactgctactagccttctgaaactatgaagaagaatgaagaaaaaatccaaaaagaatgaataatggag |
116 |
Q |
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| T |
25516691 |
cactcatgattattaagaagctgggaatctgcactgctactagccttctgaaactatgaagaggaatgaagaaaaaatccaaaaagaatgaagaatggag |
25516592 |
T |
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| Q |
117 |
tcacctattcgctgattaattaacatgaaacacataaaggaaggtaaataacatggggatcatctctctattgttccaacctcaccagtccctttcacct |
216 |
Q |
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| T |
25516591 |
tcacctattcgctgattaattaacatgaaacacataaaggaaggtaaataacatggggatcatctctctattgttccaacctcaccagtccctttcacct |
25516492 |
T |
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| Q |
217 |
taataatcaatccatccactgtatagaactaactactaagtattat |
262 |
Q |
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| T |
25516491 |
taataatcaatccatccattgtatagaactaactactaagtattat |
25516446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 25525804 - 25525895
Alignment:
| Q |
142 |
tgaaacacataaaggaaggtaaataacatggggatcatctctctattgttccaacctc-accagtccctttcaccttaataatcaatccatc |
232 |
Q |
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| T |
25525804 |
tgaaacaaataaaggaaggtaaactacatgaggatcatctctctattgtttcaacctctccccgcccctttcaccttaataatcaatccatc |
25525895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 25525402 - 25525495
Alignment:
| Q |
17 |
cactcatgattattaagaagctgggaatctgcactgctact--agccttctgaaactatgaagaagaatgaagaaaaaatccaaaaagaatgaa |
108 |
Q |
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| T |
25525402 |
cactcataatcactaagaagttgggaagttgcactgctactgcagccttctgaagctatgaaaaggaatgaaaaaagaatctaaaatgaatgaa |
25525495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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