View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7329_high_5 (Length: 248)
Name: NF7329_high_5
Description: NF7329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7329_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 9172709 - 9172923
Alignment:
| Q |
18 |
attaatagaagacaaatttggacacgtgattgtaattatctcaaatagtaatgtaaggactcaaatagtaactatagtgtgctcatttgattcattaata |
117 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||| || |||| ||||||||||||||||||| |
|
|
| T |
9172709 |
attaatagaagacaaatttgaacaggtgattgtaattatctcaaatagtaatgtaaggactcgaatagtaaccatcgtgtactcatttgattcattaata |
9172808 |
T |
|
| Q |
118 |
ataaagcatattaaaatacttatgaaatattcttttatgctttagcttgtatacttgcatctcttgtattcataatcaacactattatacaggtgcacca |
217 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9172809 |
ataatgcatattaaaatacttatgaaatattcttttatgctttagcttgtatacttgcatctcttgtattcataatcaacactattatacaggtgcacca |
9172908 |
T |
|
| Q |
218 |
tttgtaatcgatatt |
232 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
9172909 |
tttgtaatcgatatt |
9172923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University