View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7329_low_2 (Length: 354)

Name: NF7329_low_2
Description: NF7329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7329_low_2
NF7329_low_2
[»] chr2 (9 HSPs)
chr2 (34-241)||(32276075-32276288)
chr2 (102-241)||(32302680-32302819)
chr2 (165-241)||(32295075-32295150)
chr2 (307-346)||(32302881-32302920)
chr2 (165-237)||(22139326-22139397)
chr2 (165-240)||(32241460-32241532)
chr2 (309-346)||(32295208-32295245)
chr2 (130-166)||(32241554-32241590)
chr2 (130-166)||(32295017-32295053)
[»] scaffold1678 (1 HSPs)
scaffold1678 (165-241)||(1090-1165)
[»] scaffold0786 (1 HSPs)
scaffold0786 (165-237)||(3335-3406)
[»] scaffold0390 (2 HSPs)
scaffold0390 (165-237)||(1867-1938)
scaffold0390 (165-237)||(14851-14922)


Alignment Details
Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 34 - 241
Target Start/End: Original strand, 32276075 - 32276288
Alignment:
Q  34 gacacacaaaggtgatgaaataaactataatgctaattccatacaagggctaaattttttgtgacccttg------attcaattagaggtcattaagaaa 127  Q
    |||| ||||||||||||||||||| ||||||||||||| ||| ||| |||||||||||| |  || ||||      |||| |||||||||| ||||| ||    
T  32276075 gacaaacaaaggtgatgaaataaagtataatgctaatttcatgcaaaggctaaatttttggcaacacttgcgattgattccattagaggtcgttaaggaa 32276174  T
Q  128 ccgagcaagtctttctcattccaaatatagcaaagtccaaacgattggatcaaggctcttgcatgcttctatataaagacttagtagtatcccattgttt 227  Q
    | || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||    
T  32276175 ctgaccaagtctttctcattccaaatatagcaaactccaaacgattggatcaaggctcttgcatgctcctatataaagacttggtagtatcacattgttt 32276274  T
Q  228 ttcatcacaagggg 241  Q
    ||||||||||||||    
T  32276275 ttcatcacaagggg 32276288  T

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Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 102 - 241
Target Start/End: Original strand, 32302680 - 32302819
Alignment:
Q  102 tgattcaattagaggtcattaagaaaccgagcaagtctttctcattccaaatatagcaaagtccaaacgattggatcaaggctcttgcatgcttctatat 201  Q
    ||||||||||||||||| ||||| || | ||||||| ||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||| ||||||    
T  32302680 tgattcaattagaggtctttaaggaatcaagcaagtttttctcattccaaatatagcaaactccaaacgattggaccaaagctcttgcatgctcctatat 32302779  T
Q  202 aaagacttagtagtatcccattgtttttcatcacaagggg 241  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  32302780 aaagacttggtagtatcccattgtttttcatcacaagggg 32302819  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 32295075 - 32295150
Alignment:
Q  165 caaacgattggatcaaggctcttgcatgcttctatataaagacttagtagtatcccattgtttttcatcacaagggg 241  Q
    |||||||||||| ||||  | ||||||||| |||||||| ||||| ||| |||||||||||||||||||||||||||    
T  32295075 caaacgattggaccaagattattgcatgctcctatataa-gacttggtaatatcccattgtttttcatcacaagggg 32295150  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 346
Target Start/End: Original strand, 32302881 - 32302920
Alignment:
Q  307 ggcaaggtcattttttgtcgttgctctcattgtctctgct 346  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  32302881 ggcaaggtcattttctgtcgttgctctcattgtctctgct 32302920  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 22139397 - 22139326
Alignment:
Q  165 caaacgattggatcaaggctcttgcatgcttctatataaagacttagtagtatcccattgtttttcatcacaa 237  Q
    |||||||||||| ||||  | ||||||||| |||||||| | ||| |||||||| ||||||||||||||||||    
T  22139397 caaacgattggaccaagattattgcatgctcctatataa-gtcttggtagtatcacattgtttttcatcacaa 22139326  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 240
Target Start/End: Complemental strand, 32241532 - 32241460
Alignment:
Q  165 caaacgattggatcaaggctcttgcatgcttctatataaagacttagtagtatcccattgtttttcatcacaaggg 240  Q
    |||||||||||| ||||  | ||||||||| ||||||||    || |||||||| |||||||||||||||||||||    
T  32241532 caaacgattggaccaagattattgcatgctcctatataag---ttggtagtatcacattgtttttcatcacaaggg 32241460  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 346
Target Start/End: Original strand, 32295208 - 32295245
Alignment:
Q  309 caaggtcattttttgtcgttgctctcattgtctctgct 346  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  32295208 caaggtcatttgttgtcgttgctctcattgtttctgct 32295245  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 32241590 - 32241554
Alignment:
Q  130 gagcaagtctttctcattccaaatatagcaaagtcca 166  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  32241590 gagcaagtctttctcattccaaatataacaaactcca 32241554  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 32295017 - 32295053
Alignment:
Q  130 gagcaagtctttctcattccaaatatagcaaagtcca 166  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  32295017 gagcaagtctttctcattccaaatataacaaaatcca 32295053  T

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Target: scaffold1678 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold1678
Description:

Target: scaffold1678; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 1165 - 1090
Alignment:
Q  165 caaacgattggatcaaggctcttgcatgcttctatataaagacttagtagtatcccattgtttttcatcacaagggg 241  Q
    |||||||||||| ||||  ||||||||||| ||| |||| ||||| |||||||| ||||||||||||| ||||||||    
T  1165 caaacgattggaccaagattcttgcatgctcctacataa-gactttgtagtatcacattgtttttcattacaagggg 1090  T

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Target: scaffold0786 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0786
Description:

Target: scaffold0786; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 3335 - 3406
Alignment:
Q  165 caaacgattggatcaaggctcttgcatgcttctatataaagacttagtagtatcccattgtttttcatcacaa 237  Q
    |||||||||||| ||||  | ||||||||| |||||||| | ||| |||||||| ||||||||||||||||||    
T  3335 caaacgattggaccaagattattgcatgctcctatataa-gtcttggtagtatcacattgtttttcatcacaa 3406  T

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Target: scaffold0390 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 1867 - 1938
Alignment:
Q  165 caaacgattggatcaaggctcttgcatgcttctatataaagacttagtagtatcccattgtttttcatcacaa 237  Q
    |||||||||||| ||||  | ||||||||| |||||||| | ||| |||||||| ||||||||||||||||||    
T  1867 caaacgattggaccaagattattgcatgctcctatataa-gtcttggtagtatcacattgtttttcatcacaa 1938  T

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Target: scaffold0390; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 14851 - 14922
Alignment:
Q  165 caaacgattggatcaaggctcttgcatgcttctatataaagacttagtagtatcccattgtttttcatcacaa 237  Q
    |||||||||||| ||||  | ||||||||| |||||| ||| ||| |||||||  ||||||||||||||||||    
T  14851 caaacgattggaccaagattattgcatgctcctatat-aagtcttggtagtatgacattgtttttcatcacaa 14922  T

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