View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7329_low_3 (Length: 276)
Name: NF7329_low_3
Description: NF7329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7329_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 6489513 - 6489255
Alignment:
| Q |
1 |
cacaatcgattatgttctccctaacaaaactcacaacaagtacgatgtcttcttccactcagacatcattcacacaatgatcacaaataaacctttcatg |
100 |
Q |
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|||||||| ||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6489513 |
cacaatcggttatgctctccctaacaaaactcacaa---gtacgatgtcttctttcactcagacatcattcacacaatgatcacaaatagacctttcatg |
6489417 |
T |
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| Q |
101 |
gtggacaaatggctctcaagcatcaaaccctacgaaaacaacaatagattccttgtcggcttggatgttgagtgtctcttcatcaaccgcagcagtgtgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
6489416 |
gtggacaaatggctctcaagcatcaaaccctacgaaaacaacaatagattccttgtcggcttggatgttgagtgtctcttcatcaaccgcatcggtgtgt |
6489317 |
T |
|
| Q |
201 |
cc-ccccagctgctgtccgttcaactctacataggcggagaatgccttgttttccaaatcct |
261 |
Q |
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|| ||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
6489316 |
cccccccagctgatgtccgttcaactctacatagccgaagaatgccttgttttccaaatcct |
6489255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 6480039 - 6480265
Alignment:
| Q |
1 |
cacaatcgattatgttctccctaacaaaactcacaacaagtacgatgtcttcttccactcagacatcattcacacaatgatcacaaataaacctttcatg |
100 |
Q |
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|||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6480039 |
cacaatcgattacgctctccctaacaaaaaccacaacaagtacgatgtcttcttccactcagacatcattcacacaatgatcacaaataaacctttcatg |
6480138 |
T |
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| Q |
101 |
gtggacaaatggctctcaagcatcaaaccctacgaaaacaacaatagattccttgtcggcttggatgttgagtgtctcttcatcaaccgcagcagtgtgt |
200 |
Q |
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| T |
6480139 |
gtggacaaatggctctcaagcatcaaaccctacgaaaacaacaatagattccttgtcggcttggatgttgagtgtctcttcatcaaccgcagtggtgtgt |
6480238 |
T |
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| Q |
201 |
ccccc-cagctgctgtccgttcaactc |
226 |
Q |
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||||| ||| ||||||||||||||||| |
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| T |
6480239 |
cccccgcagttgctgtccgttcaactc |
6480265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 51946775 - 51947035
Alignment:
| Q |
1 |
cacaatcgattatgttctccctaacaaaactcacaacaagtacgatgtcttcttccactcagacatcattcacacaatgatcacaaataaacctttcatg |
100 |
Q |
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|||||||||||| | | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51946775 |
cacaatcgattacgctgtccctaataaaactcacaacaagcacgatgtcttcttccactcagacatcattcacacaatgatcacaaataaacctttcatg |
51946874 |
T |
|
| Q |
101 |
gtggacaaatggctctcaagcatcaaaccctacgaaaacaacaatagattccttgtcggcttggatgttgagtgtctcttcatcaaccgcagcagtgtgt |
200 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| | |||||| |
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| T |
51946875 |
gtggacaaatggctctcaagcatcaaaccatacgaaaacaacaatagcttccttgtcggcttagatgttgagtgtctcttcatcaaccactctggtgtgt |
51946974 |
T |
|
| Q |
201 |
c-cccccagctgctgtccgttcaactctacataggcggagaatgccttgttttccaaatcct |
261 |
Q |
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| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
51946975 |
ctcccccagctgctgtcc-ttcaactatacataggcggagaatgccttgttttccaaatcct |
51947035 |
T |
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