View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7330_high_11 (Length: 370)
Name: NF7330_high_11
Description: NF7330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7330_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 351
Target Start/End: Original strand, 32095749 - 32096084
Alignment:
| Q |
16 |
cacaggttaaccatttcatttcagtaaacaaaaattcaaatccatgagatagggcacatgatgatccaacaccgtaattctataaatatattagctcttt |
115 |
Q |
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| T |
32095749 |
cacaagttaaccatttcatttcagtaaacaaaaattcaaatccatgagatggggcacatggtgatccaacaccgtaattctataaatatattagctcttt |
32095848 |
T |
|
| Q |
116 |
aactaatacaggcttgatacaatggccaagatacgaccgactaccaccaaatagtgccaataataaatcaaaattggagtaactaattatacagtaatct |
215 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32095849 |
aactaatacaggcttgatacaatgaccaagatacgaccgactaccaccaaatagtgccaataataaatcaaaattggagtaactaattatacagtaatct |
32095948 |
T |
|
| Q |
216 |
taaccaagaccaagcattggatataaaatgaaattcctaactaactaccatgaatagctaaatacgaagtataattgcccaacagaagtaataccataag |
315 |
Q |
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| T |
32095949 |
taaccaagaccaagcattggatataaaatgaaattcctaactaactaccatgaatagctaaatacgaagtataattgcccaacagaagtaataccataag |
32096048 |
T |
|
| Q |
316 |
aagaatagtggctcattacttggcaaccgtcctatt |
351 |
Q |
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||||||| |||||||||||||||||||||||||||| |
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| T |
32096049 |
aagaataatggctcattacttggcaaccgtcctatt |
32096084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 93 - 343
Target Start/End: Original strand, 32091741 - 32091994
Alignment:
| Q |
93 |
ttctataaatatattagctctttaactaatacaggcttgatacaatggccaagatacgaccgactaccaccaaatagtgccaataataaatcaaaattgg |
192 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
32091741 |
ttctataattatattagctctttaacaaatacaggcttgatacattgaccaagatacgaccgactaccaccaaatagttgcaataataaatcaacattgg |
32091840 |
T |
|
| Q |
193 |
agtaactaattatacagtaatcttaaccaagaccaagcattggatataaaatgaaattcctaactaactaccatgaatagctaaatacgaagtataattg |
292 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||| ||||| |||| |
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| T |
32091841 |
agtaactaattatgcagtaatcttaaccaagaccaagcattggttataaaatgaatttcctaactaaccaccatgaatagctaaatactaagtacaattt |
32091940 |
T |
|
| Q |
293 |
cccaacagaag---taataccataagaagaatagtggctcattacttggcaacc |
343 |
Q |
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| T |
32091941 |
cacaacagaagtaataataccataagaataacagtcgctcattgcttggcaacc |
32091994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 32091623 - 32091717
Alignment:
| Q |
16 |
cacaggttaaccatttcatttcagtaaacaaaaattcaaatccatgagataggg-------cacatgatgatccaacaccgtaattctataaata |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
32091623 |
cacaggttaaccatttcatttcagtaaacaaaaattcaaatccatgagatagggcacatgccacatggtgatccaacaccgtaattctataaata |
32091717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 213 - 317
Target Start/End: Complemental strand, 29887882 - 29887778
Alignment:
| Q |
213 |
tcttaaccaagaccaagcattggatataaaatgaaattcctaactaactaccatgaatagctaaatacgaagtataattgcccaacagaagtaataccat |
312 |
Q |
| |
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|||||||||| |||||||||| |||||| |||||||||||| |||| ||||||||||||||||||| ||||| |||| |||| | | |||||||||| |
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| T |
29887882 |
tcttaaccaataccaagcattagatatattatgaaattcctatgtaaccaccatgaatagctaaatacaaagtacaatttcccacaaaaggtaataccat |
29887783 |
T |
|
| Q |
313 |
aagaa |
317 |
Q |
| |
|
||||| |
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|
| T |
29887782 |
aagaa |
29887778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 323
Target Start/End: Complemental strand, 29904125 - 29904017
Alignment:
| Q |
213 |
tcttaaccaagaccaagcattggatataaaatgaaattcctaactaactaccatgaatagctaaatacgaagtataattgcccaacagaagtaataccat |
312 |
Q |
| |
|
||||||||||||||||||| | |||| | |||||||||| | |||||| ||||||||||||||||| ||||| |||| |||| || | |||||||| |
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| T |
29904125 |
tcttaaccaagaccaagcagtagata-attatgaaattcc-atgtaactatcatgaatagctaaatacaaagtacaatttcccacaggaggcaataccat |
29904028 |
T |
|
| Q |
313 |
aagaagaatag |
323 |
Q |
| |
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||||| ||||| |
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| T |
29904027 |
aagaataatag |
29904017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 29428029 - 29428098
Alignment:
| Q |
197 |
actaattatacagtaatcttaaccaagaccaagcattggatataaaatgaaattcctaactaactaccat |
266 |
Q |
| |
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| T |
29428029 |
actaattttacagcaatcttaacaaataacaagcattgaatatattatgaatttcctaactaacaaccat |
29428098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 29427875 - 29427907
Alignment:
| Q |
77 |
tgatccaacaccgtaattctataaatatattag |
109 |
Q |
| |
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|||||||||||||||||||||| |||||||||| |
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| T |
29427875 |
tgatccaacaccgtaattctattaatatattag |
29427907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 323
Target Start/End: Complemental strand, 41746642 - 41746472
Alignment:
| Q |
157 |
taccaccaaatagtgccaataataaatcaaaattggagtaactaattatacagtaatcttaaccaagaccaagcat---tggatataaaatgaaattcct |
253 |
Q |
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||||||||| |||| || ||||||||||| ||||||||||||||||||||| ||||||||||| | ||||||||| |||||||| ||||||| ||| |
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| T |
41746642 |
taccaccaagtagttgcagtaataaatcaacattggagtaactaattatacaataatcttaacctaaaccaagcataactggatatattatgaaatacct |
41746543 |
T |
|
| Q |
254 |
aactaactaccatgaatagctaaatac-gaagtataattgcccaacagaagtaataccataagaagaatag |
323 |
Q |
| |
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|| |||| |||| |||||||||||| ||||| || | || |||||| |||||||||||| || ||||| |
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| T |
41746542 |
aagtaaccaccacatatagctaaatactaaagtacaacttccaaacagaggtaataccataataataatag |
41746472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 41746796 - 41746719
Alignment:
| Q |
21 |
gttaaccatttcatttcagtaaacaaaaattcaaatccatgagatagggcacatgatgatccaacaccgtaattctat |
98 |
Q |
| |
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||||| ||||||||||||||| |||||| ||||||| | ||| || | ||||||| |||||| |||| |||||||||| |
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| T |
41746796 |
gttaaacatttcatttcagtatacaaaagttcaaatacgtgaaatggagcacatggtgatccgacactgtaattctat |
41746719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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