View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7330_high_15 (Length: 317)
Name: NF7330_high_15
Description: NF7330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7330_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 10311109 - 10311425
Alignment:
| Q |
1 |
gattagtgtaatatgaaaacaaaagaagtctaagaagtcaccacaccaccacatatataaaaaagaaa----ccataataatctttggacaaacatacat |
96 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||| |||||||| |
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| T |
10311109 |
gattagtgtaatattaaaacaaaagaagtctaagaagtcaccaaaccaccacatatataaaaaaaaaaaaaaccataataatctttggacacacatacat |
10311208 |
T |
|
| Q |
97 |
gatacacctctcgagaaggaaataaatgatatgattgatgaaataggttggtgatgcgat-nnnnnnnngataaaataagatgttgaaatttaatcactt |
195 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |||| || |||||| ||||||||||||||||||||||||||||||| |
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| T |
10311209 |
gatacacctctcgaaaaggaaataaatgatatgattgatgaaatatgttgatggtgcgataaaaaaaaagataaaataagatgttgaaatttaatcactt |
10311308 |
T |
|
| Q |
196 |
aaaagtaataacaatcgccccttaagtgagttaaaatgacaaaatgcatagacaaaaaatatattatggcg------cagatgttctatgtctttattct |
289 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||| |
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| T |
10311309 |
aaaagcgataacgatcgccccttaagtgagttaaaatgacaaaatgcatagacaaaaaatatattatggcgcaagttcagatgttcaatgtctctattct |
10311408 |
T |
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| Q |
290 |
tcatcattcgtgtgtgc |
306 |
Q |
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||||||||||||||||| |
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| T |
10311409 |
tcatcattcgtgtgtgc |
10311425 |
T |
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