View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7330_high_17 (Length: 269)
Name: NF7330_high_17
Description: NF7330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7330_high_17 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 14 - 269
Target Start/End: Original strand, 54396219 - 54396474
Alignment:
| Q |
14 |
acatcactcttatcaatcttagcatcccttagacacttctcaacaggttccatacatttcctaaacaaatccatattcaattcttcaaatctcgcccttg |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54396219 |
acatgactcttatcaatcttagcatcccttagacacttctcaacaggttccatacatttcctaaacaaatccatattcaattcttcaaatctcgcccttg |
54396318 |
T |
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| Q |
114 |
taatagttgcatagaaatcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttagctctctcacaagctgt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54396319 |
taatagttgcatagaaatcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttagctctctcacaagctgt |
54396418 |
T |
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| Q |
214 |
tcttaatctcctcaaagctcttgcattaccactaatatccttcttatttttcctcc |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54396419 |
tcttaatctcctcaaagctcttgcattaccactaatatccttcttatttttcctcc |
54396474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 268
Target Start/End: Complemental strand, 23588098 - 23587851
Alignment:
| Q |
21 |
tcttatcaatcttagcatcccttagacacttctcaacaggttccatacatttcctaaacaaatccatattcaattcttcaaatctcgcccttgtaatagt |
120 |
Q |
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||||||| |||||||||||||| | ||||||||||||||| |||||||| |||||||||| |||||| || | |||||||| | |||| || || || |
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| T |
23588098 |
tcttatccatcttagcatccctcaaacacttctcaacaggctccatacacttcctaaacagatccatgttgagctcttcaaaacgagcccgagtgatggt |
23587999 |
T |
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| Q |
121 |
tgcatagaaatcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttagctctctcacaagctgttcttaat |
220 |
Q |
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| T |
23587998 |
agtgtaaaagtcaataccctcaaacaatgaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaat |
23587899 |
T |
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| Q |
221 |
ctcctcaaagctcttgcattaccactaatatccttcttatttttcctc |
268 |
Q |
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| T |
23587898 |
cttctaagagcccttggatttccactaatatccttcttattcttcctc |
23587851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 21 - 268
Target Start/End: Complemental strand, 23596950 - 23596703
Alignment:
| Q |
21 |
tcttatcaatcttagcatcccttagacacttctcaacaggttccatacatttcctaaacaaatccatattcaattcttcaaatctcgcccttgtaatagt |
120 |
Q |
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||||||| |||||||||||||| | ||||||||||||||| |||||||| |||||||| | |||||| || | |||||||| | || | ||||| || |
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| T |
23596950 |
tcttatccatcttagcatccctcaaacacttctcaacaggctccatacacttcctaaatagatccatgttgagctcttcaaaacgagcgcgagtaatggt |
23596851 |
T |
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| Q |
121 |
tgcatagaaatcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttagctctctcacaagctgttcttaat |
220 |
Q |
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| || || ||||| || |||||||||||||||||||| || || || |||||||| || ||||| || |||||||||||||||||||| ||||| || |
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| T |
23596850 |
agtgtaaaagtcaataccctcaaacaaagaatcaatttcaatggtggtttgagcagtagaggaaagagtcctcttagctctctcacaagcagttctcaac |
23596751 |
T |
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| Q |
221 |
ctcctcaaagctcttgcattaccactaatatccttcttatttttcctc |
268 |
Q |
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|| || | ||| |||| ||| ||||||||||| |||||||| |||||| |
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| T |
23596750 |
cttctaagagcccttggatttccactaatatctttcttattcttcctc |
23596703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 29 - 268
Target Start/End: Complemental strand, 8017770 - 8017531
Alignment:
| Q |
29 |
atcttagcatcccttagacacttctcaacaggttccatacatttcctaaacaaatccatattcaattcttcaaatctcgcccttgtaatagttgcataga |
128 |
Q |
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||||||||||| || | ||||||||||||||| |||||||| || || |||| |||||| || | ||| |||||||| || | || || || | || | |
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| T |
8017770 |
atcttagcatctctcaaacacttctcaacaggctccatacactttctgaacagatccatgttaagttcctcaaatcttgcacgggtgattgtggtgtaaa |
8017671 |
T |
|
| Q |
129 |
aatcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttagctctctcacaagctgttcttaatctcctcaa |
228 |
Q |
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|||||| || ||||||||||||||||| || || || || || ||||| ||||| || |||||||| ||||||||||||||||| || || ||||| | |
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| T |
8017670 |
aatcaacaccctcaaacaaagaatcaatctcaatggtagtttgtgcagtagaagagagagttctcttcgctctctcacaagctgtcctcaacctcctaag |
8017571 |
T |
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| Q |
229 |
agctcttgcattaccactaatatccttcttatttttcctc |
268 |
Q |
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||||| | || ||||||||||||||||| || |||||| |
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| T |
8017570 |
tgctctagggtttccactaatatccttcttgttcttcctc |
8017531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 8102469 - 8102674
Alignment:
| Q |
20 |
ctcttatcaatcttagcatcccttagacacttctcaacaggttccatacatttcctaaacaaatccatattcaattcttcaaatctcgcccttgtaatag |
119 |
Q |
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||||| || ||||||||||| || | ||||||||||||||| |||||||| ||||| |||| |||||| || | ||| |||||||| || | || || | |
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| T |
8102469 |
ctcttgtccatcttagcatctctcaaacacttctcaacaggctccatacacttcctgaacagatccatgttaagttcctcaaatctggcacgggtgattg |
8102568 |
T |
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| Q |
120 |
ttgcatagaaatcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttagctctctcacaagctgttcttaa |
219 |
Q |
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| | || ||||||| || ||||||||||||||||| || || || || || || ||||| || || |||||||| ||||||||||| || ||||| || |
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| T |
8102569 |
tggtgtaaaaatcaacaccctcaaacaaagaatcaatctcaatggtagtttgtgcggttgatgagagagttctcttcgctctctcacatgcggttctcaa |
8102668 |
T |
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| Q |
220 |
tctcct |
225 |
Q |
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|||||| |
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| T |
8102669 |
tctcct |
8102674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 210
Target Start/End: Original strand, 39985553 - 39985638
Alignment:
| Q |
125 |
tagaaatcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttagctctctcacaagc |
210 |
Q |
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|||||||||||||||||||| | |||||||||||| || || ||||| ||||| ||||| || |||||||| ||||| |||||||| |
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| T |
39985553 |
tagaaatcaattccttcaaaaagagaatcaatttcaatggtggtctgggcagtagaagagagagttctcttcgctctttcacaagc |
39985638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 8570275 - 8570347
Alignment:
| Q |
182 |
gaaagtgttctcttagctctctcacaagctgttcttaatctcctcaaagctcttgcattaccactaatatcct |
254 |
Q |
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| T |
8570275 |
gaaagtgtcctttttgccctctcacaagctgttcttaacctcctcaaggcttttgggttcctactaatatcct |
8570347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 12258787 - 12258715
Alignment:
| Q |
180 |
aagaaagtgttctcttagctctctcacaagctgttcttaatctcctcaaagctcttgcattaccactaatatc |
252 |
Q |
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||||||||| ||| || || ||||||||||||||| | ||||||||||||||||||| ||| ||||| ||||| |
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| T |
12258787 |
aagaaagtgatctttttgcactctcacaagctgttttcaatctcctcaaagctcttggatttccacttatatc |
12258715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 258
Target Start/End: Complemental strand, 17716949 - 17716815
Alignment:
| Q |
124 |
atagaaatcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttagctctctcacaagctgttcttaatctc |
223 |
Q |
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||||||||||||||| ||||| | | |||||||||| || || ||||| ||||| || || || | |||||| || ||||||||||| || || || ||| |
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| T |
17716949 |
atagaaatcaattccctcaaatagacaatcaatttcaatggtggtctgggcagtagatgatagagctctcttcgccctctcacaagcagtcctcaacctc |
17716850 |
T |
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| Q |
224 |
ctcaaagctcttgcattaccactaatatccttctt |
258 |
Q |
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| | |||||||| || |||||||| |||||||| |
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| T |
17716849 |
ataagagctcttgggttgccactaatgtccttctt |
17716815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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