View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7330_high_3 (Length: 818)
Name: NF7330_high_3
Description: NF7330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7330_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 477 - 799
Target Start/End: Complemental strand, 36083807 - 36083485
Alignment:
| Q |
477 |
attactacttactttggaagttcaagttcacaaagggcaaaaagaagaatttcttcacttaaccacaccacaaaatcataccatcgaaaatcaagttcac |
576 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36083807 |
attactgcttactttggaagttcaagttcacaaagggcaaaaagaagaatttcttcacttaaccacaccacaaaatcataccatcgaaaatcaagttcac |
36083708 |
T |
|
| Q |
577 |
aacaaagagcaagaagaagcacctctccttttaactaaaccacaaccgcacaccattgaagttgaagttcacaacaaagaccaagaagaagaacttctcc |
676 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36083707 |
aacaaagagcaagaagaagcacctctccttttaactaaaccacgaccgcacaccattgaagttgaagttcacaacaaagaccaagaagaagaacttctcc |
36083608 |
T |
|
| Q |
677 |
tcttaatcacaccacaaccggacaccatggaagttcaagcacacaaagaggaagaacaagcacttctcctccaaacatgtgcactcaaaataaatgacaa |
776 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36083607 |
tcttaatcacaccacaaccggacaccatggaagttcaagcacacaaagaggaagaacaagcacttctcctccaaacatgtgcactcaaaataaatgacaa |
36083508 |
T |
|
| Q |
777 |
agaagaagaacactctccgaaac |
799 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
36083507 |
agaagaagaacactctccgaaac |
36083485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 225 - 524
Target Start/End: Complemental strand, 36084136 - 36083840
Alignment:
| Q |
225 |
atattcttaaatgataagagaagtttattaataaatctatgaaaaaatatatctcatttgaattgtgtatcttgttctcattcctaaataagagttcttt |
324 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36084136 |
atattcttaaatgataagaaaagtttattaataaatctatgaaaaaatatatctcatttgaattgtgtatcttgttctcattcctaa-taagagttcttt |
36084038 |
T |
|
| Q |
325 |
ttcactannnnnnnncataggaagtgacacttacgccaatcatcacattttaaaattttatttgtatgaatcttctttaagatgattgagaagcttttgc |
424 |
Q |
| |
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|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36084037 |
ttcattattttttt-cataggaagtgacacttacgccaatcatcacattttaaaattttatttgtatgaatcttctttaagatgattgagaagcttttgc |
36083939 |
T |
|
| Q |
425 |
ctcaaacaatagaaaaatgtttgagaagccatgcgccctataagnnnnnnnnattactacttactttggaagttcaagttcacaaagggcaaaaagaaga |
524 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36083938 |
ctcaaacaatagaaaaatgtttgagaagccatgcgccctataag-ttcttttattactacttactttggaagttcaagttcacaaagggcaaaaagaaga |
36083840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 36085864 - 36085651
Alignment:
| Q |
13 |
tggacatcatttcgaatctaattatatgaatcttttaggatgaaggtttggatgtgattgtagaaggattggatactttgaaaaacatggcacacgatat |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36085864 |
tggacatcatttcgaatctaattatatgaatcttttaggatgaaggtttggatgtgattgtagaaggattggatactttgaaaaacatggcacacgatat |
36085765 |
T |
|
| Q |
113 |
gaatgaggtcagattccctattgtgtttgtctttcatcctttgcgtgtgtgatatacttatttgaatgtttaagtttgctaaatacaggaatttgatagg |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36085764 |
gaatgaggtcagattccctattgtgtttgtctttcatcctttgcgtgtgtgatatacttatttgaatgtttaagtttgctaaatacaggaatttgatagg |
36085665 |
T |
|
| Q |
213 |
caagttttactgat |
226 |
Q |
| |
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|||||||||||||| |
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|
| T |
36085664 |
caagttttactgat |
36085651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 491 - 678
Target Start/End: Complemental strand, 36149987 - 36149803
Alignment:
| Q |
491 |
tggaagttcaagttcacaaagggcaaaaagaagaatttcttcacttaaccacaccacaaaatcataccatcgaaaatcaagttcacaacaaagagcaaga |
590 |
Q |
| |
|
||||| |||||| ||||||| ||| |||||||| |||||||||||||||||||||||||||||||| | ||| | |||||||||||||||||||||| |
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| T |
36149987 |
tggaaattcaagcccacaaagatcaagaagaagaacttcttcacttaaccacaccacaaaatcatacccttgaagctgaagttcacaacaaagagcaaga |
36149888 |
T |
|
| Q |
591 |
agaagcacctctccttttaactaaaccacaaccgcacaccattgaagttgaagttcacaacaaagaccaagaagaagaacttctcctc |
678 |
Q |
| |
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| |||||||||| |||||||||| |||||| |||||||||||||||||| ||| ||| ||||||| ||||||||| |||||||||| |
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| T |
36149887 |
aaaagcacctctacttttaactataccacatccgcacaccattgaagttcaag--cac-gcaaagacgaagaagaagcacttctcctc |
36149803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 578 - 785
Target Start/End: Complemental strand, 36149972 - 36149765
Alignment:
| Q |
578 |
acaaagagcaagaagaagcacctctccttttaactaaaccacaaccgcacaccattgaagttgaagttcacaacaaagaccaagaagaagaacttctcct |
677 |
Q |
| |
|
||||||| |||||||||| || ||| | ||||| | ||||||| || ||| |||||| |||||||||||||||||| |||||| ||| || ||| || |
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|
| T |
36149972 |
acaaagatcaagaagaagaacttcttcacttaaccacaccacaaaatcatacccttgaagctgaagttcacaacaaagagcaagaaaaagcacctctact |
36149873 |
T |
|
| Q |
678 |
cttaatcacaccacaaccggacaccatggaagttcaagcacacaaagaggaagaacaagcacttctcctccaaacatgtgcactcaaaataaatgacaaa |
777 |
Q |
| |
|
|||| | |||||| ||| ||||||| ||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
36149872 |
tttaactataccacatccgcacaccattgaagttcaagcacgcaaagacgaagaagaagcacttctcctccaaacatgtgcactcaaaatagatgagaaa |
36149773 |
T |
|
| Q |
778 |
gaagaaga |
785 |
Q |
| |
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|||||||| |
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| T |
36149772 |
gaagaaga |
36149765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 355 - 457
Target Start/End: Complemental strand, 36069733 - 36069633
Alignment:
| Q |
355 |
ttacgccaatcatcacattttaaaattttatttgtatgaatcttctttaagatgattgagaagcttttgcctcaaacaatagaaaaatgtttgagaagcc |
454 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| | |||||||||| ||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
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|
| T |
36069733 |
ttacgccaatcatcacatttaaaagttttatgtatatgaatctt-tttaagatgtttgagaagtttttgcctcaaacaata-aaaaatgtttgagaagcc |
36069636 |
T |
|
| Q |
455 |
atg |
457 |
Q |
| |
|
||| |
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|
| T |
36069635 |
atg |
36069633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 228 - 302
Target Start/End: Complemental strand, 36069851 - 36069776
Alignment:
| Q |
228 |
ttcttaaatgataagagaagttt-attaataaatctatgaaaaaatatatctcatttgaattgtgtatcttgttct |
302 |
Q |
| |
|
||||||| |||| |||||| ||| |||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
36069851 |
ttcttaactgatgagagaatttttattaataaatctatgataaaatatatctcattttaattgtgtatcttgttct |
36069776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 751 - 799
Target Start/End: Complemental strand, 36149610 - 36149562
Alignment:
| Q |
751 |
acatgtgcactcaaaataaatgacaaagaagaagaacactctccgaaac |
799 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
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| T |
36149610 |
acatgtgcactcaaaatagatgacaaagaagaagaacactctcctaaac |
36149562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 701 - 783
Target Start/End: Complemental strand, 36160672 - 36160590
Alignment:
| Q |
701 |
ccatggaagttcaagcacacaaagaggaagaacaagcacttctcctccaaacatgtgcactcaaaataaatgacaaagaagaa |
783 |
Q |
| |
|
||||||||| ||||||| |||||||| ||||| ||||||||||| |||||||| |||||| ||||| | ||||||||||| |
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| T |
36160672 |
ccatggaagctcaagcatacaaagagcaagaagaagcacttctcatccaaacacttgcacttcaaatagacaacaaagaagaa |
36160590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 174; Significance: 3e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 40730144 - 40730349
Alignment:
| Q |
13 |
tggacatcatttcgaatctaattatatgaatcttttaggatgaaggtttggatgtgattgtagaaggattggatactttgaaaaacatggcacacgatat |
112 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40730144 |
tggacatcatttcaaatctaattatatgaatcttttaggatgaaggtttggatgtgattgcagaaggattggatactttgaaaaacatggcacacgatat |
40730243 |
T |
|
| Q |
113 |
gaatgaggtcagattccctattgtgtttgtctttcatcctttgcgtgtgtgatatacttatttgaatgtttaagtttgctaaatacaggaatttgatagg |
212 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
40730244 |
gaacgaggtcagattgcctattgtgtttgtctttcatcctttgcgtgtgtgatatatttatttgaatgtttaagtttgtcaaatgcaggaatttgatagg |
40730343 |
T |
|
| Q |
213 |
caagtt |
218 |
Q |
| |
|
|||||| |
|
|
| T |
40730344 |
caagtt |
40730349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 48 - 124
Target Start/End: Complemental strand, 28511149 - 28511073
Alignment:
| Q |
48 |
taggatgaaggtttggatgtgattgtagaaggattggatactttgaaaaacatggcacacgatatgaatgaggtcag |
124 |
Q |
| |
|
|||||| ||||||||||| |||||| |||||||||||||||||||||| ||||||| || || |||||||||||||| |
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|
| T |
28511149 |
taggatcaaggtttggatatgattgcagaaggattggatactttgaaagacatggcgcatgacatgaatgaggtcag |
28511073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 705 - 783
Target Start/End: Original strand, 26527329 - 26527413
Alignment:
| Q |
705 |
ggaagttcaagcacacaaagagg------aagaacaagcacttctcctccaaacatgtgcactcaaaataaatgacaaagaagaa |
783 |
Q |
| |
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||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| | ||||||| |
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| T |
26527329 |
ggaagttcaagcacacaaagaggtagaagaagaagaagcacttctcctccaaacatgtgcactcaaaatagatgagatagaagaa |
26527413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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