View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7330_high_7 (Length: 463)

Name: NF7330_high_7
Description: NF7330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7330_high_7
NF7330_high_7
[»] chr5 (20 HSPs)
chr5 (1-463)||(9838493-9838951)
chr5 (193-405)||(11050095-11050307)
chr5 (193-365)||(10749278-10749450)
chr5 (221-365)||(19608128-19608272)
chr5 (197-409)||(10598867-10599079)
chr5 (191-389)||(10609482-10609680)
chr5 (193-354)||(10719172-10719333)
chr5 (195-343)||(10742987-10743135)
chr5 (193-343)||(10562801-10562951)
chr5 (24-312)||(10592559-10592840)
chr5 (191-409)||(10602525-10602743)
chr5 (314-463)||(10593654-10593803)
chr5 (195-354)||(10765389-10765548)
chr5 (194-322)||(10548578-10548706)
chr5 (191-411)||(10590644-10590864)
chr5 (198-461)||(10578786-10579049)
chr5 (271-377)||(10556772-10556878)
chr5 (223-342)||(7190806-7190925)
chr5 (230-345)||(10654485-10654600)
chr5 (292-327)||(10664920-10664955)
[»] chr6 (6 HSPs)
chr6 (197-345)||(12897343-12897491)
chr6 (197-345)||(12946419-12946567)
chr6 (197-345)||(12904964-12905112)
chr6 (197-345)||(12930054-12930202)
chr6 (197-345)||(12955856-12956004)
chr6 (197-258)||(12955578-12955639)
[»] chr2 (1 HSPs)
chr2 (197-345)||(17925689-17925837)
[»] chr3 (1 HSPs)
chr3 (220-408)||(31469379-31469561)
[»] chr1 (3 HSPs)
chr1 (196-321)||(39886309-39886434)
chr1 (219-321)||(39893288-39893390)
chr1 (219-321)||(39878205-39878307)


Alignment Details
Target: chr5 (Bit Score: 438; Significance: 0; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 9838951 - 9838493
Alignment:
Q  1 atacattcctacctaagtataattaagcaaaccaacgaatctattagcctcttgttccttaaccaaatgaagcatttttctttcttcttacctatatttt 100  Q
    ||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9838951 atacattcctacctaagtataa----gcaaaccaacgaatctattagcctcttgttccttaaccaaatgaagcatttttctttcttcttacctatatttt 9838856  T
Q  101 ggtatttataccttcatctccttcttctagttcttcctttgaacttaacttggttttgcccaaacagaactgtagcagtagcagaggccttggcattagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9838855 ggtatttataccttcatctccttcttctagttcttcctttgaacttaacttggttttgcccaaacagaactgtagcaatagcagaggccttggcattagg 9838756  T
Q  201 aaaccaaactgatcatcttgcattgctccaattcaaagaatcaatatccagtgacccaaatggagtcttagattcttggaattcttctatccacttctgc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9838755 aaaccaaactgatcatcttgcattgctccaattcaaagaatcaatatccagtgacccaaatggagtcttagattcttggaattcttctatccacttctgc 9838656  T
Q  301 aactggcatggaatcacatgcaaccccatgcatcaaagagttacaaaattgaacttacaaggatacaagttgcatgggtccatgtcaccttacattggca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9838655 aactggcatggaatcacatgcaaccccatgcatcaaagagttacaaaattgaacttacaaggatacaagttgcatggatccatgtcaccttacattggca 9838556  T
Q  401 atctctctcgtataagaaacatcaaccttaaaaacaataccttctttggaaaaattccacagg 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9838555 atctctctcgtataagaaacatcaaccttaaaaacaataccttctttggaaaaattccacagg 9838493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 193 - 405
Target Start/End: Complemental strand, 11050307 - 11050095
Alignment:
Q  193 gcattaggaaaccaaactgatcatcttgcattgctccaattcaaagaatcaatatccagtgacccaaatggag-tcttagattcttggaattcttctatc 291  Q
    ||||||||||||||||| |||||| |||||||| |  ||||||||||| |||||| | ||||||||||||||| |||| || |||||||||||||| |||    
T  11050307 gcattaggaaaccaaacagatcattttgcattgattaaattcaaagaaacaatataccgtgacccaaatggagctctt-gaatcttggaattcttccatc 11050209  T
Q  292 cacttctgcaactggcatggaatcacatgcaaccccatgcatcaaagagttacaaaattgaacttacaaggatacaagttgcatgggtccatgtcacctt 391  Q
    || |||||||| ||||||||||||||||||| || ||||||||||||||||||||| |||||| || |||||||  |||||||||| || || ||||| |    
T  11050208 catttctgcaagtggcatggaatcacatgcagcctcatgcatcaaagagttacaaagttgaacctagaaggatatcagttgcatggatcaatatcaccct 11050109  T
Q  392 acattggcaatctc 405  Q
    |  |||||||||||    
T  11050108 atgttggcaatctc 11050095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 193 - 365
Target Start/End: Complemental strand, 10749450 - 10749278
Alignment:
Q  193 gcattaggaaaccaaactgatcatcttgcattgctccaattcaaagaatcaatatccagtgacccaaatggag-tcttagattcttggaattcttctatc 291  Q
    ||||||||||||||||| |||||| | ||||||| | |||| |||||||||||||| ||||||||||||  || |||| || |||||||||||||| |||    
T  10749450 gcattaggaaaccaaacagatcatttggcattgcacaaatttaaagaatcaatatcgagtgacccaaataaagctctt-gaatcttggaattcttccatc 10749352  T
Q  292 cacttctgcaactggcatggaatcacatgcaaccccatgcatcaaagagttacaaaattgaacttacaaggata 365  Q
    ||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||| ||||||||| |||||||    
T  10749351 cacttctgcaagtggcatggaatcacatgcaaacccatgcatgaaagagttacaaagttgaacttagaaggata 10749278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 221 - 365
Target Start/End: Complemental strand, 19608272 - 19608128
Alignment:
Q  221 cattgctccaattcaaagaatcaatatccagtgacccaaatggagtcttagattcttggaattcttctatccacttctgcaactggcatggaatcacatg 320  Q
    ||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||  ||| |  ||||| ||||| |||||||||||||||||    
T  19608272 cattgctccaattcaaagattcaatatcaattgacccaaatggagtcttagattcttggaatagttcaacacacttttgcaattggcatggaatcacatg 19608173  T
Q  321 caaccccatgcatcaaagagttacaaaattgaacttacaaggata 365  Q
    || |||||||||||||||||||| | |||||||| ||||||||||    
T  19608172 cagccccatgcatcaaagagttatagaattgaacctacaaggata 19608128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 197 - 409
Target Start/End: Original strand, 10598867 - 10599079
Alignment:
Q  197 taggaaaccaaactgatcatcttgcattgctccaattcaaagaatcaatatccagtgacccaaatggagtcttagattcttggaattcttctatccactt 296  Q
    |||||||||||||||||||| | || ||||||||||||||  ||| | |||| ||||||||| ||||  |||||||||||||||||  ||| |  |||||    
T  10598867 taggaaaccaaactgatcatttggctttgctccaattcaaccaattagtatctagtgacccatatggtatcttagattcttggaatagttcaactcactt 10598966  T
Q  297 ctgcaactggcatggaatcacatgcaaccccatgcatcaaagagttacaaaattgaacttacaaggatacaagttgcatgggtccatgtcaccttacatt 396  Q
     ||||| ||||||||||||| |||||| |||| |||||||||||||||||| ||||  || | | | |||||||||||||| ||||| || || || |||    
T  10598967 ttgcaattggcatggaatcatatgcaatcccaagcatcaaagagttacaaagttgaggttgccaagttacaagttgcatggatccatatctccatatatt 10599066  T
Q  397 ggcaatctctctc 409  Q
    |||||||||||||    
T  10599067 ggcaatctctctc 10599079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 191 - 389
Target Start/End: Original strand, 10609482 - 10609680
Alignment:
Q  191 tggcattaggaaaccaaactgatcatcttgcattgctccaattcaaagaatcaatatccagtgacccaaatggagtcttagattcttggaattcttctat 290  Q
    ||||||||||||||||||||||| || |  |||||||  ||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||| ||    
T  10609482 tggcattaggaaaccaaactgattatttgtcattgcttaaattcaaagaatcaatatccaatgatccaaatggagtcttagattcttggaatttttccat 10609581  T
Q  291 ccacttctgcaactggcatggaatcacatgcaaccccatgcatcaaagagttacaaaattgaacttacaaggatacaagttgcatgggtccatgtcacc 389  Q
    ||| || || || |||| |||| ||||||||| | | ||||| |||||||||| | | |||||| |  |||||||  |||||||||| ||||| |||||    
T  10609582 ccatttatgtaagtggcgtggagtcacatgcagctctatgcaacaaagagttatagagttgaaccttgaaggatatcagttgcatggatccatatcacc 10609680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 193 - 354
Target Start/End: Complemental strand, 10719333 - 10719172
Alignment:
Q  193 gcattaggaaaccaaactgatcatcttgcattgctccaattcaaagaatcaatatccagtgacccaaatggag-tcttagattcttggaattcttctatc 291  Q
    |||||||| |||||||| |||||| | ||||||||| |||||||||||| |||| ||||||| ||| ||| || |||| || |||||||||||||| |||    
T  10719333 gcattaggtaaccaaacagatcatttagcattgctcaaattcaaagaatgaataaccagtgatccatatgaagctctt-gaatcttggaattcttccatc 10719235  T
Q  292 cacttctgcaactggcatggaatcacatgcaaccccatgcatcaaagagttacaaaattgaac 354  Q
    ||||||||||| ||||||||||||||||||| |||||||||| ||||||||||| | ||||||    
T  10719234 cacttctgcaagtggcatggaatcacatgcagccccatgcatgaaagagttacagagttgaac 10719172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 195 - 343
Target Start/End: Complemental strand, 10743135 - 10742987
Alignment:
Q  195 attaggaaaccaaactgatcatcttgcattgctccaattcaaagaatcaatatccagtgacccaaatggag-tcttagattcttggaattcttctatcca 293  Q
    ||||||||||||| | |||||| | ||||||||| ||||||||||||||||||| ||||| ||| ||  || |||| || |||||||||||||| |||||    
T  10743135 attaggaaaccaatcagatcatttggcattgctcaaattcaaagaatcaatatcaagtgatccatataaagctctt-gagtcttggaattcttccatcca 10743037  T
Q  294 cttctgcaactggcatggaatcacatgcaaccccatgcatcaaagagtta 343  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  10743036 cttctgcaagtggtatggaatcacatgcaaccccatgcatcaaagagtta 10742987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 193 - 343
Target Start/End: Original strand, 10562801 - 10562951
Alignment:
Q  193 gcattaggaaaccaaactgatcatcttgcattgctccaattcaaagaatcaatatccagtgaccca---aatggagtcttagattcttggaattcttcta 289  Q
    ||||||||||||||||| |||||| | ||||||||| ||||||||||||||||||||||||| |||   ||||   |||| || |||||||||||||| |    
T  10562801 gcattaggaaaccaaacagatcatttagcattgctcaaattcaaagaatcaatatccagtgatccatacaatgc--tctt-gaatcttggaattcttcca 10562897  T
Q  290 tccacttctgcaactggcatggaatcacatgcaaccccatgcatcaaagagtta 343  Q
    ||||||||||||| ||||| |||||||| |||||||||||||||||||||||||    
T  10562898 tccacttctgcaagtggcagggaatcacttgcaaccccatgcatcaaagagtta 10562951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 24 - 312
Target Start/End: Original strand, 10592559 - 10592840
Alignment:
Q  24 taagcaaaccaacgaatctattagcctcttgttccttaaccaaatgaagcatttttctttcttcttacctatat--tttggtatttataccttcatctcc 121  Q
    |||| |||| ||| |||||||||||  |||||| ||||| |||||||||| |||| ||||||| ||| ||||||  ||||| || |||||||| |||||     
T  10592559 taagaaaactaactaatctattagcgccttgttacttaaacaaatgaagccttttcctttcttgttatctatatgttttggcatgtatacctttatctct 10592658  T
Q  122 ttcttctagttcttcctttgaacttaacttggttttgcccaaacagaactgtagcagtagcagaggccttggcattaggaaaccaaactgatcatcttgc 221  Q
    |||||||    | | |||| | ||||||||||||| ||||||||| ||||  | || |      |||||||||||| | |||||||||||||||||| ||    
T  10592659 ttcttctc---catactttaagcttaacttggtttggcccaaacaaaactacaacact------ggccttggcatttgaaaaccaaactgatcatctggc 10592749  T
Q  222 attgctccaattcaaagaatcaatatccagtgacccaaatggagtcttagattcttggaattcttctatccacttctgcaactggcatgga 312  Q
    ||||||| ||||||| || || |||||||| |||||| || || || | |||||||||||| ||||||  || ||||||||||||||||||    
T  10592750 attgctcaaattcaaggagtctatatccagcgacccatatagaatcctcgattcttggaatgcttctacacaattctgcaactggcatgga 10592840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 191 - 409
Target Start/End: Original strand, 10602525 - 10602743
Alignment:
Q  191 tggcattaggaaaccaaactgatcatcttgcattgctccaattcaaagaatcaatatccagtgacccaaatggagtcttagattcttggaattcttctat 290  Q
    ||||| |||||||||||||||||||| | || ||||||||||||||  ||  |||||| ||||| ||| ||||  || ||||||||||||||  ||| |     
T  10602525 tggcactaggaaaccaaactgatcatttggctttgctccaattcaagcaactaatatctagtgatccatatggtatcctagattcttggaatagttcaac 10602624  T
Q  291 ccacttctgcaactggcatggaatcacatgcaaccccatgcatcaaagagttacaaaattgaacttacaaggatacaagttgcatgggtccatgtcacct 390  Q
    |||||| ||||| ||| ||||||||| ||||   |||| |||||||||||||||||| ||||| || ||||| ||||| |||||||| || || || ||     
T  10602625 ccacttttgcaaatggaatggaatcatatgcggtcccaagcatcaaagagttacaaacttgaagttgcaagggtacaaattgcatggatcaatatctccg 10602724  T
Q  391 tacattggcaatctctctc 409  Q
    || ||||||||||||||||    
T  10602725 tatattggcaatctctctc 10602743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 314 - 463
Target Start/End: Original strand, 10593654 - 10593803
Alignment:
Q  314 tcacatgcaaccccatgcatcaaagagttacaaaattgaacttacaaggatacaagttgcatgggtccatgtcaccttacattggcaatctctctcgtat 413  Q
    ||||||||||  ||| ||||||||||||||||||||| |  ||||||||||||||||||||||| |  || || ||||| |||||||||||| || ||||    
T  10593654 tcacatgcaattccaagcatcaaagagttacaaaattaatgttacaaggatacaagttgcatggatatatatctccttatattggcaatctcacttgtat 10593753  T
Q  414 aagaaacatcaaccttaaaaacaataccttctttggaaaaattccacagg 463  Q
    ||||||| | |||||| ||| ||||   ||||||||||||||||||||||    
T  10593754 aagaaaccttaaccttgaaagcaatggtttctttggaaaaattccacagg 10593803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 195 - 354
Target Start/End: Complemental strand, 10765548 - 10765389
Alignment:
Q  195 attaggaaaccaaactgatcatcttgcattgctccaattcaaagaatcaatatccagtgacccaaatggag-tcttagattcttggaattcttctatcca 293  Q
    ||||||||||||| | |||||  | ||||||||| ||||||||||||||||||| ||||| ||| ||  || |||| || |||||||||||||| |||||    
T  10765548 attaggaaaccaatcagatcaattggcattgctcaaattcaaagaatcaatatcaagtgatccatataaagctctt-gaatcttggaattcttccatcca 10765450  T
Q  294 cttctgcaactggcatggaatcacatgcaaccccatgcatcaaagagttacaaaattgaac 354  Q
    ||| || || ||||||||||||||||||| || |||||||||||| |||||| | ||||||    
T  10765449 cttttgaaagtggcatggaatcacatgcagcctcatgcatcaaagggttacagagttgaac 10765389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 194 - 322
Target Start/End: Original strand, 10548578 - 10548706
Alignment:
Q  194 cattaggaaaccaaactgatcatcttgcattgctccaattcaaagaatcaatatccagtgacccaaatggagtcttagattcttggaattcttctatcca 293  Q
    |||||||||||||||||||||||||  |||||||  ||||||| ||||| ||| ||||||||||| || || |  | ||||||||||||  |||||||||    
T  10548578 cattaggaaaccaaactgatcatctatcattgcttaaattcaaggaatctataaccagtgacccacatagaatgcttgattcttggaatggttctatcca 10548677  T
Q  294 cttctgcaactggcatggaatcacatgca 322  Q
     || |||||||||||||||||||| ||||    
T  10548678 tttttgcaactggcatggaatcacgtgca 10548706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 191 - 411
Target Start/End: Complemental strand, 10590864 - 10590644
Alignment:
Q  191 tggcattaggaaaccaaactgatcatcttgcattgctccaattcaaagaatcaatatccagtgacccaaatggagtcttagattcttggaattcttctat 290  Q
    ||||| ||||||||||||| |||||| | |||||||||||||||||  ||| |||||| ||||||||| ||||  || || ||   ||||||  ||| |     
T  10590864 tggcactaggaaaccaaaccgatcatttggcattgctccaattcaagcaattaatatctagtgacccatatggtatcctaaataaatggaatagttcaac 10590765  T
Q  291 ccacttctgcaactggcatggaatcacatgcaaccccatgcatcaaagagttacaaaattgaacttacaaggatacaagttgcatgggtccatgtcacct 390  Q
     ||||| ||||||||| ||||||||| |||||  |||| ||||||||||||||| || |||||  |   |||||||||||||||||| ||||| || ||     
T  10590764 tcacttttgcaactggaatggaatcatatgcagtcccaagcatcaaagagttaccaagttgaagctgtcaggatacaagttgcatggatccatatctcca 10590665  T
Q  391 tacattggcaatctctctcgt 411  Q
    || ||||| ||||| ||||||    
T  10590664 tatattggtaatctttctcgt 10590644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 198 - 461
Target Start/End: Original strand, 10578786 - 10579049
Alignment:
Q  198 aggaaaccaaactgatcatcttgcattgctccaattcaaagaatcaatatccagtgacccaaatggagtcttagattcttggaattcttctatccacttc 297  Q
    |||||||||||| |||||| | || ||||||||||||||  |||||||||| ||||| ||| ||||  |  |||||||||||||| |||| | ||||||     
T  10578786 aggaaaccaaaccgatcatttcgctttgctccaattcaagcaatcaatatctagtgatccatatggtattctagattcttggaatgcttcaacccacttt 10578885  T
Q  298 tgcaactggcatggaatcacatgcaaccccatgcatcaaagagttacaaaattgaacttacaaggatacaagttgcatgggtccatgtcaccttacattg 397  Q
    ||||| |||| |||||||  |||||  |||| |||||||||| |||| || || ||  | | |||||| ||||||||||| ||||| || || ||  |||    
T  10578886 tgcaaatggcctggaatcgtatgcagtcccaagcatcaaagatttaccaagttaaagctgccaggataaaagttgcatggatccatatctccatatgttg 10578985  T
Q  398 gcaatctctctcgtataagaaacatcaaccttaaaaacaataccttctttggaaaaattccaca 461  Q
    ||||||| |||||| | |||  | ||||||||  |||||||  |||||  ||||| ||||||||    
T  10578986 gcaatctttctcgtttgagattcctcaaccttggaaacaatggcttctacggaaacattccaca 10579049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 271 - 377
Target Start/End: Original strand, 10556772 - 10556878
Alignment:
Q  271 gattcttggaattcttctatccacttctgcaactggcatggaatcacatgcaaccccatgcatcaaagagttacaaaattgaacttacaaggatacaagt 370  Q
    ||||||||||||  ||||||||| || ||||||||| ||||||||||||||||| |||||||||||||||||||  | ||||| ||||  ||||| ||||    
T  10556772 gattcttggaatggttctatccatttttgcaactggtatggaatcacatgcaacaccatgcatcaaagagttactgagttgaagttacctggatataagt 10556871  T
Q  371 tgcatgg 377  Q
    |||||||    
T  10556872 tgcatgg 10556878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 223 - 342
Target Start/End: Original strand, 7190806 - 7190925
Alignment:
Q  223 ttgctccaattcaaagaatcaatatccagtgacccaaatggagtcttagattcttggaattcttctatccacttctgcaactggcatggaatcacatgca 322  Q
    |||||| | ||||||||||||||||| | ||| ||| ||||| |||| |  |||||||||  ||| |  ||||||||||| ||| |||||||||||||||    
T  7190806 ttgctcaagttcaaagaatcaatatctaatgatccatatggaatcttggcctcttggaatagttcaactcacttctgcaagtggtatggaatcacatgca 7190905  T
Q  323 accccatgcatcaaagagtt 342  Q
      ||||||||||||||||||    
T  7190906 gtcccatgcatcaaagagtt 7190925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 230 - 345
Target Start/End: Complemental strand, 10654600 - 10654485
Alignment:
Q  230 aattcaaagaatcaatatccagtgacccaaatggagtcttagattcttggaattcttctatccacttctgcaactggcatggaatcacatgcaaccccat 329  Q
    |||||||||||||||| || | ||||||| ||||| |||| |  ||||||||| |||| |  |||| ||| || ||||||||||| ||||| || |||||    
T  10654600 aattcaaagaatcaatttctaatgacccatatggaatcttggcctcttggaatacttcaaatcactactgtaattggcatggaattacatgtaatcccat 10654501  T
Q  330 gcatcaaagagttaca 345  Q
    ||||||||||||||||    
T  10654500 gcatcaaagagttaca 10654485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 327
Target Start/End: Complemental strand, 10664955 - 10664920
Alignment:
Q  292 cacttctgcaactggcatggaatcacatgcaacccc 327  Q
    ||||||||||| ||||||||||||||||||||||||    
T  10664955 cacttctgcaattggcatggaatcacatgcaacccc 10664920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 197 - 345
Target Start/End: Original strand, 12897343 - 12897491
Alignment:
Q  197 taggaaaccaaactgatcatcttgcattgctccaattcaaagaatcaatatccagtgaccca---aatggagtcttagattcttggaattcttctatcca 293  Q
    |||||||||||||||||||| | ||||||||| |||||||||||||||| ||||||||||||   ||||   |||| || |||||||||||||| |||||    
T  12897343 taggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaatttccagtgacccatacaatgc--tctt-gaatcttggaattcttccatcca 12897439  T
Q  294 cttctgcaactggcatggaatcacatgcaaccccatgcatcaaagagttaca 345  Q
     |||||||| ||||||||||||||||||| |||||||||| || ||||||||    
T  12897440 tttctgcaagtggcatggaatcacatgcagccccatgcatgaacgagttaca 12897491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 197 - 345
Target Start/End: Original strand, 12946419 - 12946567
Alignment:
Q  197 taggaaaccaaactgatcatcttgcattgctccaattcaaagaatcaatatccagtgacccaaatggag-tcttagattcttggaattcttctatccact 295  Q
    |||||||||||||||||||| | ||||||||| |||||||||||||||| |||||||||||| |   || |||| || ||||||||||| || || ||||    
T  12946419 taggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaatttccagtgacccatacaaagctctt-gaatcttggaattcatccattcact 12946517  T
Q  296 tctgcaactggcatggaatcacatgcaaccccatgcatcaaagagttaca 345  Q
    ||||||| ||||||||||||||||||| |||||||||| || ||||||||    
T  12946518 tctgcaagtggcatggaatcacatgcagccccatgcatgaacgagttaca 12946567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 197 - 345
Target Start/End: Original strand, 12904964 - 12905112
Alignment:
Q  197 taggaaaccaaactgatcatcttgcattgctccaattcaaagaatcaatatccagtgaccca---aatggagtcttagattcttggaattcttctatcca 293  Q
    |||||||||||||||||||| | ||||||||| ||||||||||||||||| | |||||||||   ||||   |||| || |||||||||||||| |||||    
T  12904964 taggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaataactagtgacccatacaatgc--tctt-gaatcttggaattcttccatcca 12905060  T
Q  294 cttctgcaactggcatggaatcacatgcaaccccatgcatcaaagagttaca 345  Q
     |||||||| ||||||||||||||||||| |||||||||| || ||||||||    
T  12905061 tttctgcaagtggcatggaatcacatgcagccccatgcatgaacgagttaca 12905112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 197 - 345
Target Start/End: Original strand, 12930054 - 12930202
Alignment:
Q  197 taggaaaccaaactgatcatcttgcattgctccaattcaaagaatcaatatccagtgaccca---aatggagtcttagattcttggaattcttctatcca 293  Q
    ||||||| |||||||||||||| ||||||||| ||||||||||||||||| | |||||||||   |||  | |||| || |||||||||||||| |||||    
T  12930054 taggaaagcaaactgatcatctggcattgctcaaattcaaagaatcaataactagtgacccatacaat--actctt-gaatcttggaattcttccatcca 12930150  T
Q  294 cttctgcaactggcatggaatcacatgcaaccccatgcatcaaagagttaca 345  Q
    ||||||||| ||||||||||||||||| | |||||||||| || ||||||||    
T  12930151 cttctgcaagtggcatggaatcacatgtagccccatgcatgaacgagttaca 12930202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 197 - 345
Target Start/End: Original strand, 12955856 - 12956004
Alignment:
Q  197 taggaaaccaaactgatcatcttgcattgctccaattcaaagaatcaatatccagtgaccca---aatggagtcttagattcttggaattcttctatcca 293  Q
    |||||||||||||||||||| | ||||||||| |||||||||||||||| || |||||||||   ||||   |||| || |||||||||||||| |||||    
T  12955856 taggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaatttcaagtgacccatacaatgc--tctt-gaatcttggaattcttccatcca 12955952  T
Q  294 cttctgcaactggcatggaatcacatgcaaccccatgcatcaaagagttaca 345  Q
     |||||||| ||||| ||||||||||||| |||||||||| || ||||||||    
T  12955953 tttctgcaagtggcaaggaatcacatgcagccccatgcatgaacgagttaca 12956004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 258
Target Start/End: Original strand, 12955578 - 12955639
Alignment:
Q  197 taggaaaccaaactgatcatcttgcattgctccaattcaaagaatcaatatccagtgaccca 258  Q
    |||||||||||||||||||| | ||||||||| |||||||||||||||| || |||||||||    
T  12955578 taggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaatttctagtgaccca 12955639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 197 - 345
Target Start/End: Complemental strand, 17925837 - 17925689
Alignment:
Q  197 taggaaaccaaactgatcatcttgcattgctccaattcaaagaatcaatatccagtgacccaaatggag-tcttagattcttggaattcttctatccact 295  Q
    |||||||||||||||||||| | ||||||||| |||||||||||||||| || ||||||||| |   || |||| || |||||||||||||| ||||| |    
T  17925837 taggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaatttctagtgacccatacaaagctctt-gaatcttggaattcttccatccatt 17925739  T
Q  296 tctgcaactggcatggaatcacatgcaaccccatgcatcaaagagttaca 345  Q
    ||||||| ||||||||||||||||||| |||||||||| || ||||||||    
T  17925738 tctgcaagtggcatggaatcacatgcagccccatgcatgaacgagttaca 17925689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 220 - 408
Target Start/End: Complemental strand, 31469561 - 31469379
Alignment:
Q  220 gcattgctccaattcaaagaatcaatatccagtgacccaaatggagtcttagattcttggaattcttctatccacttctgcaactggcatggaatcacat 319  Q
    ||||||||| ||||||| |||||||||||||  ||| ||||| || ||||||| |||||||||   ||||  || || ||||| ||||||||||||||||    
T  31469561 gcattgctcaaattcaaggaatcaatatccaaagactcaaatagaatcttagactcttggaatagctctacacaattttgcaagtggcatggaatcacat 31469462  T
Q  320 gcaaccccatgcatcaaagagttacaaaattgaacttacaaggatacaagttgcatgggtccatgtcaccttacattggcaatctctct 408  Q
    |      |||| |||||||||||||| |||||||  || ||||||| ||||||||||| || || ||||||||  |||| |||||||||    
T  31469461 g------catgaatcaaagagttacagaattgaaactagaaggatataagttgcatggatctatatcaccttatgttggtaatctctct 31469379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 196 - 321
Target Start/End: Complemental strand, 39886434 - 39886309
Alignment:
Q  196 ttaggaaaccaaactgatcatcttgcattgctccaattcaaagaatcaatatccagtgacccaaatggagtcttagattcttggaattcttctatccact 295  Q
    ||||||||| | ||||| |||  |||||| ||| |||||||||||||||| |||||||||||   |||||| ||| | |||||||||  ||||| |||||    
T  39886434 ttaggaaacaacactgaccattctgcattactcaaattcaaagaatcaatgtccagtgacccttttggagtattaaactcttggaatagttctacccact 39886335  T
Q  296 tctgcaactggcatggaatcacatgc 321  Q
    | ||||  ||||||||| | ||||||    
T  39886334 tttgcatgtggcatggagtaacatgc 39886309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 321
Target Start/End: Complemental strand, 39893390 - 39893288
Alignment:
Q  219 tgcattgctccaattcaaagaatcaatatccagtgacccaaatggagtcttagattcttggaattcttctatccacttctgcaactggcatggaatcaca 318  Q
    |||||| ||| |||||||||||||||| |||||||||||   |||||| ||| | |||||||||  ||||| |||||| ||||  ||||||||| | |||    
T  39893390 tgcattactcaaattcaaagaatcaatgtccagtgacccttttggagtattaaactcttggaatagttctacccacttttgcatgtggcatggagtaaca 39893291  T
Q  319 tgc 321  Q
    |||    
T  39893290 tgc 39893288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 321
Target Start/End: Complemental strand, 39878307 - 39878205
Alignment:
Q  219 tgcattgctccaattcaaagaatcaatatccagtgacccaaatggagtcttagattcttggaattcttctatccacttctgcaactggcatggaatcaca 318  Q
    |||||| ||| ||||||| ||||||||||||||||||||   |||||| |||   |||||||||  ||||| |||||| ||||  ||||||||| | |||    
T  39878307 tgcattactcaaattcaaggaatcaatatccagtgacccttttggagtattaacctcttggaatagttctacccacttttgcatgtggcatggagtaaca 39878208  T
Q  319 tgc 321  Q
    |||    
T  39878207 tgc 39878205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University