View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7330_high_8 (Length: 432)
Name: NF7330_high_8
Description: NF7330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7330_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 419
Target Start/End: Complemental strand, 4688288 - 4687885
Alignment:
| Q |
18 |
agaccatgccaacctgtgattacaagttggagggaggatcccctttattattaggtgttcattatgtgggttactcaataattaatatcaatcacagaac |
117 |
Q |
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| T |
4688288 |
agaccatgccaacctgtgattacaagttggagggaggatcccctttattattaggtgttcattatgtgggttactcaataattaatatcaatcacagaac |
4688189 |
T |
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| Q |
118 |
atgaaattgtacttgacataattgtatgtatatttgatataccatttatgacttgtcaacattattccgtgtaattgcacacaaacttggcggcataagt |
217 |
Q |
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| T |
4688188 |
atgaaattgtacttgacataattgtatgtatatttgatataccatttatgacttgtcaacattattccgtgtaattgcacacaaacttggcggcataagt |
4688089 |
T |
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| Q |
218 |
t-gaaattaatattgatggtgctcttaccttttaatcaaagaattattcacgagattcctaagaaaatgacaaatcatagttttccaatgtttattgcta |
316 |
Q |
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| T |
4688088 |
tagaaattaatattgatggtgctcttaccttttaatcaaagaattattcacgagattcctaagaaaatgacaaatcatagttttccaatgtttattgtta |
4687989 |
T |
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| Q |
317 |
acnnnnnnnncttcttctttctaattacccaccataattaggattttagaccagtagatgtt-caaaatgttttcatgggaccctttgagctccgctatg |
415 |
Q |
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| T |
4687988 |
aattttttttcttcttctttctaattacccaccataattaggattttagaccagtagatgttccaaaatgtttccatgggaccctttgagctccgctatg |
4687889 |
T |
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| Q |
416 |
tgat |
419 |
Q |
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| T |
4687888 |
tgat |
4687885 |
T |
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