View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7330_low_1 (Length: 951)
Name: NF7330_low_1
Description: NF7330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7330_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 907; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 907; E-Value: 0
Query Start/End: Original strand, 16 - 938
Target Start/End: Complemental strand, 42453754 - 42452832
Alignment:
| Q |
16 |
cagctgaaactcttaatcgatcatatctatgcatcaaaatgatgtcttcgaatttggatggcattggatcaaactcttcttgcaattcatcttcacttgc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42453754 |
cagctgaaactcttaatcgatcatatctatgcatcaaaatgatgtcttcgaatttggatggcattggatcaaactcttcttgcaattcatcttcacttgc |
42453655 |
T |
|
| Q |
116 |
tgtatgcacatgagacaaatgcaaatctgcatgggataatgtttttggctttatttgaaattccagcagcatatggactataagagcaagaaatattgct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42453654 |
tgtatgcacatgagacaaatgcaaatctgcatgggataatgtttttggctttatttgaaattcctgcagcatatggactataagagcaagaaatattgct |
42453555 |
T |
|
| Q |
216 |
ggcaacaacgattgaggcagaaagaacaagacgacgagcaacaagtgagctataattggtgaaacaagatctttccacttgcgtacgtcatcaaaataag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42453554 |
ggcaacaacgattgaggcagaaagaacaagacgacgagcaacaagtgagctataattggtgaaacaagatctttccacttgcgtacgtcatcaaaataag |
42453455 |
T |
|
| Q |
316 |
tgtaaataccaaccaagcaatttagaaagacgttgatcctctcaaaatcagctttacatcttctcatactccacacgatttcacgtgaatctagcatata |
415 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42453454 |
tgtaaataccaaccaagcaatttagaaagacgttaatcctctcaaaatcagctttacatcttctcatactccacacgatttcacgtgaatctagcatata |
42453355 |
T |
|
| Q |
416 |
atcaacaacctcatttctcaacggcggttcagctttgctcatatttgaccgcacaagctcgatagtttgttgccttaatccgtataactgagcttgagac |
515 |
Q |
| |
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| T |
42453354 |
atcaacaacctcatttctcaacggcggttcagctttgctcatatttgaccgcacaagctcgatagtttgttgccttaatccgtataactgagcttgagac |
42453255 |
T |
|
| Q |
516 |
agcggatcctcgaaatgttgtggaaaaagcattggcactgtgtactttttgtacaaattagctttagaagggctagtaaacttgaaagacaattgaattt |
615 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42453254 |
agcggatcctcgaaatgttgtggaaaaagcattggcattgtgtactttttatacaaattagctttagaagggctagtaaacttgaaagacaattgaattt |
42453155 |
T |
|
| Q |
616 |
cccccatcttcttcagcccagaaggttgaagttgaacaagaggataagaataattgtaaacggtgttgatttccatttctgatagactgattctcacctt |
715 |
Q |
| |
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| T |
42453154 |
cccccatcttcttcagcccagaaggttgaagttgaacaagaggataagaataattgtaaacggtgttgatttccatttctgatagactgattctcacctt |
42453055 |
T |
|
| Q |
716 |
ccctatccttgtatcgtttgctccagcagctatatattcttcatgtaattgactattatcaaacacagaaataatgaaaaatgtagatggatcatagacc |
815 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42453054 |
ccctatccttgtatcgtttgctccagcagctatatattcttcatgtaattgactattatcaaacacagaaataatgaaaaatgtagatggatcatagacc |
42452955 |
T |
|
| Q |
816 |
ttccaagagtattgctcattccactttggagaaagactattaacaacagttcttgaccgaacccattttgagccatatttagctacacaataggcatcgg |
915 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42452954 |
ttccaagagtattgctcattccactttggagaaagactattaacaacagttcttgaccgaacccattttgagccatatttagctacacaataggcatcgg |
42452855 |
T |
|
| Q |
916 |
tgcgaccttgaggtttcatctct |
938 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
42452854 |
tgcgaccttgaggtttcatctct |
42452832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 804 - 916
Target Start/End: Original strand, 27253643 - 27253755
Alignment:
| Q |
804 |
ggatcatagaccttccaagagtattgctcattccactttggagaaagactattaacaacagttcttgaccgaacccattttgagccatatttagctacac |
903 |
Q |
| |
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|||||||| || | ||||| ||||||||||||||| |||| |||||||||| ||||| ||| |||| | |||||||| || ||||| |||||||||| |
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| T |
27253643 |
ggatcataaacttcccaagtatattgctcattccaccttggtgaaagactatcaacaatagtccttgttctcacccatttagaaccatacttagctacac |
27253742 |
T |
|
| Q |
904 |
aataggcatcggt |
916 |
Q |
| |
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|||| || ||||| |
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| T |
27253743 |
aatatgcgtcggt |
27253755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 804 - 916
Target Start/End: Original strand, 21197801 - 21197913
Alignment:
| Q |
804 |
ggatcatagaccttccaagagtattgctcattccactttggagaaagactattaacaacagttcttgaccgaacccattttgagccatatttagctacac |
903 |
Q |
| |
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|||||||| || | ||||| ||||||||||||||| |||| |||||| ||| ||||| ||| |||| | |||||||| || ||||| |||||||||| |
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| T |
21197801 |
ggatcataaacttcccaagtatattgctcattccaccttggtgaaagaatatcaacaatagtccttgttctcacccatttagaaccatacttagctacac |
21197900 |
T |
|
| Q |
904 |
aataggcatcggt |
916 |
Q |
| |
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|||| || ||||| |
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|
| T |
21197901 |
aatatgcgtcggt |
21197913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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