View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7330_low_12 (Length: 361)

Name: NF7330_low_12
Description: NF7330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7330_low_12
NF7330_low_12
[»] chr7 (1 HSPs)
chr7 (57-349)||(49098949-49099241)


Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 57 - 349
Target Start/End: Complemental strand, 49099241 - 49098949
Alignment:
Q  57 taacgatgctcttgaattttgcacacaactaacaggttcaattgttgttccattggctttgaggtctgctattgatcttgggatctttgacatcctatcc 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49099241 taacgatgctcttgaattttgcacacaactaacaggttcaattgttgttccattggctttgaggtctgctattgatcttgggatctttgacatcctatcc 49099142  T
Q  157 aaagctggtaatagtgcacaactctctgcagatgatattgctgttaagattggaaccaaaaacccagaagcagcaacaatgttagatcgtcttcttaggt 256  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49099141 aaagctggtaatggtgcacaactctctgcagatgatattgctgttaagattggaaccaaaaacccagaagcagcaacaatgttagatcgtcttcttaggt 49099042  T
Q  257 tgttggcaagtcactctattctaaactcctatgttcctcaacatcctcaaacccttgagagattctacagcctctcaaaccactccaaatatt 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49099041 tgttggcaagtcactctattctaaactcctatgttcctcaacatcctcaaacccttgagagattctacagcctctcaaaccactccaaatatt 49098949  T

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