View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7330_low_13 (Length: 352)
Name: NF7330_low_13
Description: NF7330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7330_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 7e-71; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 37000788 - 37000653
Alignment:
| Q |
13 |
ggacatcaaggatttggaggctactgagaaaatagattttcccccaaccaagcaagtaaggattcattcatattcactgcaaatagaattctcccaagga |
112 |
Q |
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| T |
37000788 |
ggacatcaaggatttggaggctactgagaaaatagattttcccccaaccaagcaagtaaggattcattcatattcactgcaaatagaattctcccaagga |
37000689 |
T |
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| Q |
113 |
caaatattttagacttgagcaatgctaagaggtcat |
148 |
Q |
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| T |
37000688 |
caaatattttagacttgagcaatgctaagaggtcat |
37000653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 205 - 334
Target Start/End: Complemental strand, 37000658 - 37000529
Alignment:
| Q |
205 |
ggtcatgatttttgttgccattgttggtgctagacaacctatgctgatattgtggcaagtcaaaaatcatcatcatccatagaagaaacaaaaggaacag |
304 |
Q |
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| T |
37000658 |
ggtcatgatttttgttgccattgttggtgctagacaacctatgctgatattgtggcaagtcaaaaatcatcatcatccatagaagaaacaaaaggaacag |
37000559 |
T |
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| Q |
305 |
cggagagtgacactgctagtggggagctac |
334 |
Q |
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| T |
37000558 |
cggagagtgacactgctagtggggagctac |
37000529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 201 - 326
Target Start/End: Complemental strand, 36995957 - 36995829
Alignment:
| Q |
201 |
atgtggtcatgatttttgttgccattgttg---gtgctagacaacctatgctgatattgtggcaagtcaaaaatcatcatcatccatagaagaaacaaaa |
297 |
Q |
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| T |
36995957 |
atgtggtcatgatttttgttgtcattgttgttggtgctagagaacctatgctaatattgtggcaagtcaaacggcatcatcagccataatagaaaccaaa |
36995858 |
T |
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| Q |
298 |
ggaacagcggagagtgacactgctagtgg |
326 |
Q |
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| T |
36995857 |
ggaacagcagagagtgtcacagcttgtgg |
36995829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 61 - 176
Target Start/End: Complemental strand, 36987202 - 36987085
Alignment:
| Q |
61 |
caagcaagtaaggattcattcatattcactgcaaatagaattctcccaaggacaaata--ttttagacttgagcaatgctaagaggtcatttgtgaaagg |
158 |
Q |
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| T |
36987202 |
caagcaagtaagacttcattcatattcgctccaaatagaaatctcccagagacaaataaattttagacttgaggcattctaagaggtcatttgtgaaaga |
36987103 |
T |
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| Q |
159 |
tttgggtttacaattaca |
176 |
Q |
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| T |
36987102 |
tttaggcttacaagtaca |
36987085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 161
Target Start/End: Complemental strand, 36981098 - 36980956
Alignment:
| Q |
25 |
tttggaggctactgagaaaatagattttcccccaaccaagcaagtaaggattcattc--atattcactgcaaatagaattctcccaaggacaaat----a |
118 |
Q |
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| T |
36981098 |
tttggaagctattgagaaaaaagaaattcctgcaaccaagcaagtaaggcctcattcatatattcactcaaaatagaaatccccccaggaccaattaaaa |
36980999 |
T |
|
| Q |
119 |
ttttagacttgagcaatgctaagaggtcatttgtgaaaggttt |
161 |
Q |
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| T |
36980998 |
ttttagacttgtgacatgctaagacgtcatttgtgaaatgttt |
36980956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 36980260 - 36980093
Alignment:
| Q |
15 |
acatcaaggatttggaggctactgagaaaatagattttcccccaaccaagcaagtaaggattcattc--atattcactgcaaatagaattctcccaagga |
112 |
Q |
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|||||||| |||||||||||| ||| |||| ||| || | ||||||||||||||||||| |||| ||||||| | |||||||| ||| ||||||| |
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| T |
36980260 |
acatcaagtatttggaggctattgataaaaaagaaatttctgtaaccaagcaagtaaggattaattcatatattcatttaaaatagaaatcttccaagga |
36980161 |
T |
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| Q |
113 |
caaat----attttagac-----ttgagcaatgctaagaggtcatttgtgaaaggtttgggtttacaa |
171 |
Q |
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| T |
36980160 |
caaattaaaattttagacctgagttgaggcatgctaaaaggtcatttgtgaaagttttaggcttacaa |
36980093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 301
Target Start/End: Complemental strand, 36980060 - 36979955
Alignment:
| Q |
198 |
tggatgtggtcatgatttttgttgccat--tgttggtgctagacaacctatgctgatattgtggcaagtcaaaaatcatcatcatccatagaagaaacaa |
295 |
Q |
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||||||||||||||| ||||||||| | ||||||||||| | || |||||| ||||| | | ||||||||| |||||||| |||||| |||||| | |
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| T |
36980060 |
tggatgtggtcatgaattttgttgcattgttgttggtgctatagaatgtatgctaatatttttgtaagtcaaaaggcatcatcaaccatagtagaaacca |
36979961 |
T |
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| Q |
296 |
aaggaa |
301 |
Q |
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|||||| |
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| T |
36979960 |
aaggaa |
36979955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 36996147 - 36996082
Alignment:
| Q |
14 |
gacatcaaggatttggaggctactgagaaaatagattttcccccaaccaagcaagtaaggattcat |
79 |
Q |
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|||||||||||||||||||||| |||||||| || ||||| ||||| || |||||||| ||||| |
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| T |
36996147 |
gacatcaaggatttggaggctattgagaaaaaggaatttccttcaaccgagaaagtaaggcttcat |
36996082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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