View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7330_low_18 (Length: 287)
Name: NF7330_low_18
Description: NF7330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7330_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 45 - 273
Target Start/End: Original strand, 30069581 - 30069805
Alignment:
| Q |
45 |
ttctatatgcttatctataactgagggtaaacaaacacaaactctgtaatctcaataattgttttcaaagtaatctcatcggacactagtattctgcacg |
144 |
Q |
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| T |
30069581 |
ttctatatgcttatctataactgagggtaaacaaacacaaactctgtaatctcaataattgttttcaaagtaatctcatcggatactagtattctgcacg |
30069680 |
T |
|
| Q |
145 |
ttggtttgtgcttaattatgcattcaataattattttatattagtaatcccaatagtgaagagactgatactcaattgagattgagacatgccattattc |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30069681 |
ttggtttgtgcttaattatgcattcaataattattttatattagtaatcccaatagtgaagagactgatactcaattgagattgagacatgccattattc |
30069780 |
T |
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| Q |
245 |
aactcttaatcacttggtagaatgtatct |
273 |
Q |
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|||| ||||||||||||||| ||||| |
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| T |
30069781 |
aact----atcacttggtagaatttatct |
30069805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 122 - 273
Target Start/End: Original strand, 30050494 - 30050646
Alignment:
| Q |
122 |
atcggacactagtattctgcacgttggtttgtgcttaa-ttatgcattcaataattattttatattagtaatcccaatagtgaagagactgatactcaat |
220 |
Q |
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|||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
30050494 |
atcggacactagaattctgcacgttggattgtgcttaaattatgcattcaataattattttttattagtaatcccaataatgaagagactgatactcaat |
30050593 |
T |
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| Q |
221 |
tgagattgagacatgccattattcaactcttaatcacttggtagaatgtatct |
273 |
Q |
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| T |
30050594 |
tgagattgagacatgccactattcaactcttaatcacttggtagaatgtatct |
30050646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 141 - 273
Target Start/End: Complemental strand, 29824735 - 29824603
Alignment:
| Q |
141 |
cacgttggtttgtgcttaattatgcattcaataattattttatattagtaatcccaatagtgaagagactgatactcaattgagattgagacatgccatt |
240 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| | ||||||||||||||||||||||| |
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| T |
29824735 |
cacgtcggtttgtgtttaattatgcattcaataattattttatattagtaatcccaataatgaagaaagtgatcataaattgagattgagacatgccatt |
29824636 |
T |
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| Q |
241 |
attcaactcttaatcacttggtagaatgtatct |
273 |
Q |
| |
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||| ||||||||||||||||||||||||||||| |
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| T |
29824635 |
atttaactcttaatcacttggtagaatgtatct |
29824603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 45 - 137
Target Start/End: Original strand, 30050319 - 30050411
Alignment:
| Q |
45 |
ttctatatgcttatctataactgagggtaaacaaacacaaactctgtaatctcaataattgttttcaaagtaatctcatcggacactagtatt |
137 |
Q |
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| T |
30050319 |
ttctatatgcttatctataactgagggtaaacaaacacaaactctgtaatctcaataattgttttcaaagtaatctcatcggacactagtatt |
30050411 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 149 - 273
Target Start/End: Original strand, 30060979 - 30061106
Alignment:
| Q |
149 |
tttgtgcttaattatgcattcaataattattttatattagtaatcccaatagtgaagaga---ctgatactcaattgagattgagacatgccattattca |
245 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| |||||| ||||||| ||||||||||||| | |
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| T |
30060979 |
tttgtgtttaattatgcattcaataattattttatattagtaatcacaataatgaagagaatgatgatcatcaatttagattgaaacatgccattattta |
30061078 |
T |
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| Q |
246 |
actcttaatcacttggtagaatgtatct |
273 |
Q |
| |
|
||||||||||||||||||||||| |||| |
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|
| T |
30061079 |
actcttaatcacttggtagaatgcatct |
30061106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 169 - 268
Target Start/End: Original strand, 30077477 - 30077577
Alignment:
| Q |
169 |
caataattattttatattagtaatcccaatagtgaagagactgatactcaattgagattgagacatgccattattcaactc-ttaatcacttggtagaat |
267 |
Q |
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|
||||| ||||||||| |||||| |||||||| ||| |||| |||| | |||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
30077477 |
caatacttattttatgttagtactcccaataatgaggagagtgatcataaattgagattgagacatgccattatttaactctttaatcacttggtagaat |
30077576 |
T |
|
| Q |
268 |
g |
268 |
Q |
| |
|
| |
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|
| T |
30077577 |
g |
30077577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 30056800 - 30056849
Alignment:
| Q |
43 |
acttctatatgcttatctataactgagggtaaacaaacacaaactctgta |
92 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| ||| |||| |
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| T |
30056800 |
acttctatatgcttatctataacagagggtaaacaaacacacactatgta |
30056849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 29922577 - 29922545
Alignment:
| Q |
60 |
tataactgagggtaaacaaacacaaactctgta |
92 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
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|
| T |
29922577 |
tataactgaaggtaaacaaacacaaactctgta |
29922545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 29971730 - 29971698
Alignment:
| Q |
60 |
tataactgagggtaaacaaacacaaactctgta |
92 |
Q |
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|
||||||||| ||||||||||||||||||||||| |
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| T |
29971730 |
tataactgaaggtaaacaaacacaaactctgta |
29971698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 75
Target Start/End: Original strand, 30174225 - 30174253
Alignment:
| Q |
47 |
ctatatgcttatctataactgagggtaaa |
75 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
30174225 |
ctatatgcttatctataactgagggtaaa |
30174253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 30458609 - 30458573
Alignment:
| Q |
17 |
tacacaagctgaggttattgttaacgacttctatatg |
53 |
Q |
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|||||||||||| || ||||||||||||||||||||| |
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| T |
30458609 |
tacacaagctgatgtgattgttaacgacttctatatg |
30458573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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