View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7330_low_20 (Length: 269)
Name: NF7330_low_20
Description: NF7330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7330_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 47287805 - 47288044
Alignment:
| Q |
1 |
aatcaagatttatgtaacaagtacctctatccaatgtcacgaggcaaaaggtttctctaccaaaacagtgcattgaaaattattacatgaaagtatgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47287805 |
aatcaagatttatgtaacaagtacctctatccaatgtcacgaggcaaaaggtttctctaccaaaacagtgcattgaaaattattacatgaaa-------- |
47287896 |
T |
|
| Q |
101 |
caagtaaagaaccttccagaggnnnnnnnnntgtagatctttagagttttcagtaatatgggaaaagaatcagtaacaaaagaaataaaaaaggcaactt |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
47287897 |
caagtaaagaaccttccagaggaaaaaaaaatgtagatctttagagttttcagtaatatgggaaaagaatcagtaacaaaaaaaataaaa-aggcaactt |
47287995 |
T |
|
| Q |
201 |
tgaaaatgtttttcatccaagtatgtcttcggtctctctttccttcatg |
249 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
47287996 |
tgaaaatgtttttcatccaagcatgtcttcggtctctctttccttcatg |
47288044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University