View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7330_low_28 (Length: 227)
Name: NF7330_low_28
Description: NF7330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7330_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 14588386 - 14588474
Alignment:
| Q |
19 |
gttctgtgtgatgaaaagggttctgagaatgttattctcttgttccattccattgaagaagatgaagaagtgaaagtgttttggaaaat |
107 |
Q |
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| T |
14588386 |
gttctgtgtgatgaaaagggttctgagaatgttattctcttgttccattccattgaagaagatgaagaagtgaaagtgttttggaaaat |
14588474 |
T |
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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 14588530 - 14588570
Alignment:
| Q |
163 |
caattttgtaggagtgtttaacttagagatttttctctttc |
203 |
Q |
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| T |
14588530 |
caattttgtaggagtgtttaactgagagaattttctctttc |
14588570 |
T |
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