View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7330_low_29 (Length: 226)
Name: NF7330_low_29
Description: NF7330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7330_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 69 - 207
Target Start/End: Complemental strand, 5152203 - 5152063
Alignment:
| Q |
69 |
caagatttcaaaccaatgtccgggagatacaaaccgaagtgttcaagatgtatctcttggatgtataa-aaaatgtgaaaactacagagattctc-tgtg |
166 |
Q |
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| T |
5152203 |
caagatttcaaaccaatgctcgggagatacaaaccgaactgttcaagaggtatctcttggatgtataaaaaaatgtgaaaactacagagattctcttgtg |
5152104 |
T |
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| Q |
167 |
tatcataacatgtgagatctgaatgtcaacaaattaatatt |
207 |
Q |
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| T |
5152103 |
tatcataacatgtgagatatgaatgtcaacaaattaatatt |
5152063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 70 - 198
Target Start/End: Original strand, 17481290 - 17481418
Alignment:
| Q |
70 |
aagatttcaaaccaatgtccgggagatacaaaccgaagtgttcaagatgtatctcttggatgtataaaaaatgtgaaaactacagagattctctgtgtat |
169 |
Q |
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| T |
17481290 |
aagatttcaatccaatgtccgggagatactaaccgaaatgttcaggacgtatctctcgaatgtgtagaaaatttgagcactgcaaatgttctctgtgtat |
17481389 |
T |
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| Q |
170 |
cataacatgtgagatctgaatgtcaacaa |
198 |
Q |
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| T |
17481390 |
cagaacctgtgatatgtgaatgtcaacaa |
17481418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 203
Target Start/End: Original strand, 4933685 - 4933818
Alignment:
| Q |
69 |
caagatttcaaaccaatgtccgggagatacaaaccgaagtgttcaagatgtatctcttggatgtataaaaaatgtgaaaactacagagattctctgtgta |
168 |
Q |
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| T |
4933685 |
caaggttttaaaccaacgtccgagagatacaaaccgaagtgtacgggaggtatctctcgaatatgtaaaaaat-tgaacactacaaaggttctttgtgta |
4933783 |
T |
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| Q |
169 |
tcataacatgtgagatctgaatgtcaacaaattaa |
203 |
Q |
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| T |
4933784 |
tcggaccctctaagatttgaatgtcaataaattaa |
4933818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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