View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7330_low_5 (Length: 547)
Name: NF7330_low_5
Description: NF7330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7330_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 496; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 20 - 535
Target Start/End: Original strand, 34636914 - 34637429
Alignment:
| Q |
20 |
cagcggtgaaatgggtgtagctgagagcggtggcgcatcacttccttcaatcggcgccgacgcaatgaagcgtcgcgtaacctacttctacgaaccaagc |
119 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34636914 |
cagcggcgaaatgggtgtagctgagagcggtggcgcatcacttccttcaatcggcgccgacgcaatgaagcgtcgcgtaacctacttctacgaaccaagc |
34637013 |
T |
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| Q |
120 |
atcggtgattattactacggtcaaggtcacccaatgaaaccccatcgtatccgcatggcacacaatctcatcatccactactctctccaccgtcgtatgc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34637014 |
atcggtgattattactacggtcaaggtcacccaatgaaaccccatcgtatccgcatggcacacaatctcatcatccactactctctccaccgtcgtatgc |
34637113 |
T |
|
| Q |
220 |
aaattaaccgtcctttcgccgctgcgccggaagatatccgccggtttcactctgatgattacgtcgagttcctctcttccgtttcgccggagattgtttc |
319 |
Q |
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| T |
34637114 |
aaattaaccgtcctttcgccgctgcgccggaagatatccgccggtttcactctgatgattacgtcgagttcctctcttccgtttcgccggagattgtttc |
34637213 |
T |
|
| Q |
320 |
ggataattcacactctcattatcggcagttgaagaggtttaacgttggtgaggattgtcctgttttcgacgggctttttccgttctgccaggcttctgct |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34637214 |
ggataattcacactctcattatcggcagttgaagaggtttaacgtaggtgaggattgtcctgttttcgacgggctttttccgttctgccaggcttctgct |
34637313 |
T |
|
| Q |
420 |
ggtggatctattggtgctgctgttaggattaatcgtggtgatgctgatattgctattaattgggctggtgggttgcatcatgctaagaaagctgaagctt |
519 |
Q |
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| T |
34637314 |
ggtggatctattggtgctgctgttaggcttaatcgtggtgacgctgatattgctattaattgggctggtgggttgcatcatgctaagaaagctgaagctt |
34637413 |
T |
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| Q |
520 |
ctgggttttgtgatgt |
535 |
Q |
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| T |
34637414 |
ctgggttttgttatgt |
34637429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 36 - 529
Target Start/End: Original strand, 34630964 - 34631457
Alignment:
| Q |
36 |
gtagctgagagcggtggcgcatcacttccttcaatcggcgccgacgcaatgaagcgtcgcgtaacctacttctacgaaccaagcatcggtgattattact |
135 |
Q |
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||||||||||||||||| ||||| ||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34630964 |
gtagctgagagcggtggtgcatctcttccttcagtcggcgctgatgcaatgaagcgtcgcgtaacctacttctacgaaccaagcatcggtgattattact |
34631063 |
T |
|
| Q |
136 |
acggtcaaggtcacccaatgaaaccccatcgtatccgcatggcacacaatctcatcatccactactctctccaccgtcgtatgcaaattaaccgtccttt |
235 |
Q |
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| T |
34631064 |
acggtcaaggtcacccaatgaaaccccatcgtatccgcatggcacacaatctcatcgtccactactctctccaccgtcgtatgcaaatcaaccttccttt |
34631163 |
T |
|
| Q |
236 |
cgccgctgcgccggaagatatccgccggtttcactctgatgattacgtcgagttcctctcttccgtttcgccggagattgtttcggataattcacactct |
335 |
Q |
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| T |
34631164 |
cgccgctgcgccggaagatatctgtcgttttcactctgatgattacgtcgagtttctctcttcagtttcgccggagatcgttaaggataattcgcatcct |
34631263 |
T |
|
| Q |
336 |
cattatcggcagttgaagaggtttaacgttggtgaggattgtcctgttttcgacgggctttttccgttctgccaggcttctgctggtggatctattggtg |
435 |
Q |
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||| |||||| ||||||||||||||| |||||||| |||||||| |||||||| || |||||||||||||| || |||||||||||||||||||||||| |
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| T |
34631264 |
cataatcggctgttgaagaggtttaatgttggtgatgattgtccagttttcgatggactttttccgttctgtcaagcttctgctggtggatctattggtt |
34631363 |
T |
|
| Q |
436 |
ctgctgttaggattaatcgtggtgatgctgatattgctattaattgggctggtgggttgcatcatgctaagaaagctgaagcttctgggttttg |
529 |
Q |
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| T |
34631364 |
gtgctgctaggctcaaccgtggtgatgctgatattgctattaattgggctggtggattgcatcatgctaagaaagctgaagcttctggattttg |
34631457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 530
Target Start/End: Complemental strand, 20026625 - 20026559
Alignment:
| Q |
464 |
tgatattgctattaattgggctggtgggttgcatcatgctaagaaagctgaagcttctgggttttgt |
530 |
Q |
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|||||||||||| || ||||||||||| || |||||||| |||||| |||||| ||||| |||||| |
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| T |
20026625 |
tgatattgctataaactgggctggtggattacatcatgccaagaaatgtgaagcctctggattttgt |
20026559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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