View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7330_low_9 (Length: 421)
Name: NF7330_low_9
Description: NF7330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7330_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 25 - 404
Target Start/End: Complemental strand, 37567255 - 37566876
Alignment:
| Q |
25 |
tgcattaatttcatcttaagagagacaatttttgttgctaaatatcaatatataaagatgtaataattttatttttattttacaaaatcaggttaaacac |
124 |
Q |
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| T |
37567255 |
tgcattaatttcatcttaagagagacaatttttgttgctaaatatcaacatataaagatgtaataattttatttttattttacaaaatcaggttaaacac |
37567156 |
T |
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| Q |
125 |
ttgagattgtggatatttgagtgtagagatccaagtcataaggccttcatgtttggattagctgcatcaatacttttgtctctagcccatgttatagcca |
224 |
Q |
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| T |
37567155 |
ttgagattgtggatatttgagtgtagagatccaagtcataaggccttcatgtttggattagctgcatcaatacttttgtctctagcccatgttatagcca |
37567056 |
T |
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| Q |
225 |
atttgctaggtggctgcggttgtttttgttttcaacaagacattcaaaagtcttcacctaataggcaactctcaatggctatcctcattttaacatggta |
324 |
Q |
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| T |
37567055 |
atttgctaggtggctgcggttgtttttgttttcaacaagacattcaaaagtcttcacctaataggcaactctcaatggctatcctcattttaacatggta |
37566956 |
T |
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| Q |
325 |
atatatccttaattcctctgcttgttttcaacaatgttttaaaacccgaaacaaactagacggtttaaagaggttgaacc |
404 |
Q |
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| T |
37566955 |
atatatccttaattcctctgcttgttttcaacaatcttttaaaacccgaatcaaactagacggtttaaagaggttgaacc |
37566876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 15516173 - 15516128
Alignment:
| Q |
132 |
tgtggatatttgagtgtagagatccaagtcataaggccttcatgtt |
177 |
Q |
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| T |
15516173 |
tgtggatatttgagtgtagagaaccaagtcatgatgcattcatgtt |
15516128 |
T |
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