View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7331_high_9 (Length: 279)
Name: NF7331_high_9
Description: NF7331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7331_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 35905627 - 35905888
Alignment:
| Q |
1 |
gatggatgcaatgcaagctaaagttgatcatcacctgcctgatcttgaacataaaccacaaaatccttataagtaggcactcctttaccgcctgtccaac |
100 |
Q |
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| T |
35905627 |
gatggatgcaatgcaagccaaagttgatcatcacctgcctgatcttgaacataaatcacataatccttataagtaggcactcctttactgcctgtccaac |
35905726 |
T |
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| Q |
101 |
caataacatccgccccagtctgcgccgtttgattgttgacaaagacattgaaaacaatttcattaactttagaataaaagtaatcacaaaaatgcagcct |
200 |
Q |
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| T |
35905727 |
caataacatccgccccagtctgcgccgtttgattgttgacaaagacattgaaaacaatctcattaactttagaataaaagtaatcacaaaaatgcaacct |
35905826 |
T |
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| Q |
201 |
ggttaagtacattgaattcggatcaacttgaaacatccatgtgagattgtatcccatgttga |
262 |
Q |
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| T |
35905827 |
ggttaagtacattgaattcggatcaacttgaaacatccatgtgagattgtatcccatgttga |
35905888 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 262
Target Start/End: Complemental strand, 47623720 - 47623540
Alignment:
| Q |
82 |
cctttaccgcctgtccaaccaataacatccgccccagtctgcgccgtttgattgttgacaaagacattgaaaacaatttcattaactttagaataaaagt |
181 |
Q |
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|||||||| |||||||| ||||||| ||| || || ||| ||||| | || |||| ||| | |||||||||||| ||||| || || |||||| || |
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| T |
47623720 |
cctttacctcctgtccacccaataatatcagcttgagcctgtgccgtattgttattgagaaatatattgaaaacaatctcattgaccttggaataataga |
47623621 |
T |
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| Q |
182 |
aatcacaaaaatgcagcctggttaagtacattgaattcggatcaacttgaaacatccatgtgagattgtatcccatgttga |
262 |
Q |
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||||||| ||||||| ||| | |||||| ||||| ||||||||||| || | ||| ||||| |||||||||||||||| |
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| T |
47623620 |
aatcacagaaatgcaacctcacgaggtacatggaatttggatcaacttggaaaacccacgtgaggttgtatcccatgttga |
47623540 |
T |
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