View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7331_low_1 (Length: 782)
Name: NF7331_low_1
Description: NF7331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7331_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 149 - 432
Target Start/End: Complemental strand, 32801105 - 32800817
Alignment:
| Q |
149 |
aattctcactcaccagagggctagaacaagttgaaatagctataaaaatttagagacggaaaatgcaaaactcgtctctaattttgtcgctaagtgttat |
248 |
Q |
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| T |
32801105 |
aattctcactcaccagagggctagaacaagttgaaatagctataaaaatttagagacggaaaatgcaaaactcgtctctaattttgtcgctaagtgttat |
32801006 |
T |
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| Q |
249 |
cgacgt-----ttagttaccaattttactttttctgtatccatattttgttgttatttcaactttttctggtagtgaaataaaatatgaaataagaatca |
343 |
Q |
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| T |
32801005 |
cgacgtcaagtttagttaccaattttactttttctgtatccatattttgttgttatttcaactttttctggtaatgaaataaaatatgaaataagaatca |
32800906 |
T |
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| Q |
344 |
cctctgggatttctgtttctttccaactataatgagtatgctaacttatcaaccatattttagtgtttgactttgaattatgtaatata |
432 |
Q |
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| T |
32800905 |
cctctgggatttctgtttcttttcaactataatgagtatgctaacttatcaaccatattttagtgtttgactttgaattatgtaatata |
32800817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 594 - 770
Target Start/End: Complemental strand, 32797949 - 32797773
Alignment:
| Q |
594 |
agttttctctcaaacgtaatgtgacaatcgatgtattgatgctttatacgtttgtgaaaaaccggatctatagcaatgtggagagtgcttagtttatcac |
693 |
Q |
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| T |
32797949 |
agttttctctcaaacgtaatgtgacaatcgatgtattgatgctttatacgtttgtgaaaaaccggatctatagcaatgtggagagtgcttaggttatcac |
32797850 |
T |
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| Q |
694 |
aatacagaacttatgttattttgcaaatgattttcaaatcatttagaagatagacgatctattgaagttcacaggtt |
770 |
Q |
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| T |
32797849 |
aatacagaacttatgttattttgcaaatgattttcaaatcatttagaagatagacgatctattgaagttcacaggtt |
32797773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 457 - 599
Target Start/End: Complemental strand, 32800817 - 32800675
Alignment:
| Q |
457 |
aaggtttgaaagagtttcacccctaaatcaaaagtggacactaactaggtaggatagataactcctatgatgaaggaaatataataaacagaatactgac |
556 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
32800817 |
aaggtttgaaagagtttcacccctaaatcaaaagtggacactaactaggtaggatagataactcctatgatgaaggaaatagaataaacagaatacagac |
32800718 |
T |
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| Q |
557 |
taactggaatagttagcagcttcataattcctccttgagtttt |
599 |
Q |
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| T |
32800717 |
taactggaatagttagcagcttcataattcctccttgagtttt |
32800675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 32801253 - 32801169
Alignment:
| Q |
1 |
ttaccagtttgtccttcatttcaggaggatttccggacttgaatgaaattaagaatatgcttatgcgtctcatagcagtgaatga |
85 |
Q |
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| T |
32801253 |
ttaccagtttgtccttcatttcaggaagatttccggacttgaatgaaattaagaatatgcttatgtgtctcatagcagtgaatga |
32801169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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